BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4530.p (497 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde deh... 672 0.0 gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrog... 199 2e-52 gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogen... 138 6e-34 >gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde dehydrogenase [Janthinobacterium sp. Marseille] Length = 505 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/500 (66%), Positives = 398/500 (79%), Gaps = 5/500 (1%) Query: 3 KIAHYIGGQRVDTKSGRYADVFNPAQGVPVAQVALGTSDEVDAAVKAGVAAFPAWSNTPP 62 KI HYI G+ +T GR DVFNPA G AQV L + +V A V AA PAW++T P Sbjct: 6 KIKHYINGRLTETAGGRQQDVFNPATGEASAQVVLASDADVQAVVATAKAAAPAWADTAP 65 Query: 63 LTRARVLFRFLHLIQQRADDFARIIVREHGKTFSDAQGEVARGIEIVEFAAGIPQMLKGE 122 L RAR+LF+F LI++ DD A I REHGK FSDA+GEV RG+E+VEFA G+PQ+LK + Sbjct: 66 LKRARILFKFKDLIEKHHDDLAAAITREHGKVFSDAKGEVTRGLEVVEFACGVPQLLKTQ 125 Query: 123 YTDQIARGIDAWSMRQALGVVAGITPFNFPAMVPMWMFPIAIACGNCFVLKPSERDPSAA 182 +TD I GID W++RQ LGV AGITPFNFP MVPMWM P+A+A GN F+LKPSERDPS + Sbjct: 126 FTDNIGGGIDNWNLRQPLGVTAGITPFNFPFMVPMWMAPVALATGNTFILKPSERDPSPS 185 Query: 183 LLIADLLQEAGLPDGVFNVVQGDKVTVDALLDHPQVKAISFVGSTPIAEYIYARGSAKGK 242 L++A+LLQ+AGLPDGVFNV+QGDK+ VD LL HP VKA+SFVGSTPIAEYIYA G+A+ Sbjct: 186 LMVAELLQQAGLPDGVFNVLQGDKLAVDGLLQHPDVKAVSFVGSTPIAEYIYATGAARKG 245 Query: 243 -----RVQALGGAKNHMVVMPDADMQLAVDALMGAAYGSAGERCMAISVAVAVGSAGDEL 297 RVQALGGAKNH+VVMPDA+++ AVDAL+GAAYGSAGERCMAISVAVAVG D+L Sbjct: 246 GSYPLRVQALGGAKNHLVVMPDANLEQAVDALIGAAYGSAGERCMAISVAVAVGDIADKL 305 Query: 298 VAALAERARALKINEGMAAGAEMGPVVTAAAKERIEGLIGRGVEEGATLVVDGRGYQVPG 357 VAAL R ++LK+ GM A AEMGPVV+AA K +IEG I GV+ GA L+VDGRG +V G Sbjct: 306 VAALIPRVKSLKVKNGMEADAEMGPVVSAAHKAKIEGYIDAGVKAGAKLLVDGRGLKVAG 365 Query: 358 FEKGFFVGGTLLDHVTPEMTVYKEEIFGPVLCVLRCPDIASAVELINAHEYGNGVAVYTR 417 +KGFF+GG L DHVTPEMT+Y+EEIFGPVLCVLR P+ A+A+ELIN HE+GNGV+++T Sbjct: 366 HDKGFFLGGCLFDHVTPEMTIYQEEIFGPVLCVLRVPNFAAALELINRHEFGNGVSLFTS 425 Query: 418 DGGVAREFVRQIEVGMVGVNVPLPVPMAFSSFGGWKRSLFGDHHMYGPEGVRFYTRAKAV 477 DG AREF R++EVGMVG+NVP+PVPMA+ SFGGWKRS+FGD H YG EG++FYTR K++ Sbjct: 426 DGNTAREFSRRVEVGMVGINVPIPVPMAWHSFGGWKRSMFGDTHAYGEEGIKFYTRYKSI 485 Query: 478 MQRWPNTASAGAEFAFPQMK 497 MQRWP + GAEFA P K Sbjct: 486 MQRWPESIGKGAEFAMPTSK 505 >gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrogenase (NADP+) [Janthinobacterium sp. Marseille] Length = 490 Score = 199 bits (507), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 151/466 (32%), Positives = 234/466 (50%), Gaps = 14/466 (3%) Query: 7 YIGGQRVDTKSGRYADVFNPAQGVPVAQVALGTSDEVDAAVKAGVAAFPAWSNTPPLTRA 66 YI G V K+ DV NPA G + V + E + A++A AAFPAW+ RA Sbjct: 20 YINGAWVTGKAS--FDVNNPADGSKITDVPNLGAQETEQAIQAAHAAFPAWAAKTGKERA 77 Query: 67 RVLFRFLHLIQQRADDFARIIVREHGKTFSDAQGEVARGIEIVEFAAGIPQMLKGEYTDQ 126 ++ + LI ADD A ++ E GK +++GEV G +E+ A + + G+ Sbjct: 78 GIMRIWFDLIIANADDLAALMTAEQGKPLIESRGEVIYGASFIEWFAEEAKRVSGDVMAS 137 Query: 127 IARGIDAWSMRQALGVVAGITPFNFP-AMVPMWMFPIAIACGNCFVLKPSERDPSAALLI 185 +++Q +GV A ITP+NFP AM+ + P AIA G V+KP+E+ P +AL I Sbjct: 138 TWSDKRTVTIKQPIGVCASITPWNFPIAMITRKVAP-AIAAGCTIVIKPAEQTPLSALAI 196 Query: 186 ADLLQEAGLPDGVFNVVQGDKVTVDA----LLDHPQVKAISFVGSTPIAEYIYARGSAKG 241 A+L AG+P GV NVV D A L P V+ +SF GSTP+ + + + Sbjct: 197 AELAHRAGIPPGVINVVTSDSDQSIAVGKVLCSSPIVRHVSFTGSTPVGRILMEQCAPTV 256 Query: 242 KRVQALGGAKNHMVVMPDADMQLAVDALMGAAYGSAGERCMAISVAVAVGSAGDELVAAL 301 K++ G +V DAD+ AV + + Y +AG+ C+ + S D V L Sbjct: 257 KKIGLELGGHAPFIVFDDADLDAAVVGALQSKYRNAGQTCVCTNRFYVHESIYDTFVQKL 316 Query: 302 AERARALKINEGMAAGAEMGPVVTAAAKERIEGLIGRGVEEGATLVVDGRGYQVPGFEKG 361 A +K+ G+ G GP++ A A +++E + V +GA ++ G+ + + G Sbjct: 317 GAGAAKIKVGNGVEQGVLQGPLIDAQAVKKVEQHVSDAVSKGAKVITGGKQHAL----GG 372 Query: 362 FFVGGTLLDHVTPEMTVYKEEIFGPVLCVLRCPDIASAVELINAHEYGNGVAVYTRDGGV 421 +F T+L +++P+M + EE FGPV V++ AV N ++G Y+RD G Sbjct: 373 YFYEPTVLSNISPDMLIMHEETFGPVAAVIKFKTEDEAVAAANDTDFGLASYFYSRDIGR 432 Query: 422 AREFVRQIEVGMVGVNVPLPVPMAFSSFGGWKRSLFG-DHHMYGPE 466 ++E GMVG+N L + + FGG K+S G + YG E Sbjct: 433 VWRVAEKLEYGMVGINTGL-ISNEVAPFGGVKQSGLGREGSKYGIE 477 >gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase [Janthinobacterium sp. Marseille] Length = 1242 Score = 138 bits (348), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 124/430 (28%), Positives = 201/430 (46%), Gaps = 40/430 (9%) Query: 22 DVFNPAQGVPVAQVALGTSDEVDAAV-----KAGVAAFPAWSNTPPLTRARVLFRFLHLI 76 +V NPA V +GT + DAAV + + W P RA +L + L Sbjct: 601 EVRNPANHADV----VGTVQQADAAVLELALQHATSGINTWQAKPIAERAAILLQAADLF 656 Query: 77 QQRADDFARIIVREHGKTFSDAQGEVARGIEIVEFAAGIPQMLKGEYTDQIARGIDAWSM 136 QQ A + ++VRE GKT +A GE+ I+ + + Y+ Q A DA Sbjct: 657 QQHATELIALLVREAGKTLPNAIGELREAIDFLRY-----------YSAQ-AIASDA--- 701 Query: 137 RQALGVVAGITPFNFPAMVPMWMFPIAIACGNCFVLKPSERDPSAALLIADLLQEAGLPD 196 Q LG+VA I+P+NFP + A+A N + KP+E+ P A LL +AG+P+ Sbjct: 702 NQPLGLVACISPWNFPLSIFTGQVSAALAAANVVLAKPAEQTPLIACRAVQLLHQAGVPE 761 Query: 197 GVFNVVQGDKVTVDA-LLDHPQVKAISFVGSTPIAEYIY----ARGSAKGKRVQALG--G 249 + G T+ A L+ P+V A+ F GST +A+ I R ++GK + + G Sbjct: 762 NALLFLPGSGETIGAQLVTDPRVSAVVFTGSTQVAQSIQRKLVQRSISEGKDIPLIAETG 821 Query: 250 AKNHMVVMPDADMQLAVDALMGAAYGSAGERCMAISVAVAVGSAGDELVAALAERARALK 309 +N M+V A + V ++ +A+ SAG+RC A+ V ++ + L + L+ Sbjct: 822 GQNTMIVDSSALCEQVVRDVISSAFDSAGQRCSALRVLCLQDDIAEQTLQMLHGAMQELR 881 Query: 310 INEGMAAGAEMGPVVTAAAKERIEGLIGRGVEEGATLVVDGRGYQVPGFEKGFFVGGTLL 369 I ++GPV+ A A+ ++ I + G + R +P G FV ++ Sbjct: 882 IGRPDHLATDVGPVIDAEAQAHLQAYIRQAQAAGKQV----RQLPLP-VTNGSFVAPCII 936 Query: 370 DHVTPEMTVYKEEIFGPVLCVLRC--PDIASAVELINAHEYGNGVAVYTRDGGVAREFVR 427 + ++ + E+FGPVL VLR D+ + IN+ +G + ++TR VR Sbjct: 937 E--IADINELQREVFGPVLHVLRYRRDDLPQLLMDINSTGFGLTLGIHTRIDETIDYVVR 994 Query: 428 QIEVGMVGVN 437 +VG + VN Sbjct: 995 HAQVGNIYVN 1004 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.137 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,142,789 Number of extensions: 48884 Number of successful extensions: 159 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 150 Number of HSP's successfully gapped: 3 Length of query: 497 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 410 Effective length of database: 899,382 Effective search space: 368746620 Effective search space used: 368746620 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)