BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4528.p (472 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981206|ref|YP_001352388.1| GntR family transcriptional reg... 325 5e-90 gi|152980987|ref|YP_001354760.1| GntR family transcriptional reg... 148 6e-37 gi|152980958|ref|YP_001351821.1| GntR family transcriptional reg... 121 8e-29 gi|152980994|ref|YP_001352392.1| transcriptional regulator [Jant... 120 2e-28 gi|152981144|ref|YP_001352922.1| GntR family transcriptional reg... 119 4e-28 >gi|152981206|ref|YP_001352388.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 488 Score = 325 bits (832), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 181/463 (39%), Positives = 262/463 (56%), Gaps = 9/463 (1%) Query: 13 LQRNTSARLVEQVADGLAGLIEAGELRSGERLPSVRQFAHSHAIGASTVVEAYEQLVARG 72 L R + L+EQ+ + I+ LR+G R+PS+RQF+ H + TVVEAY++LVA G Sbjct: 22 LSRTAGSSLIEQIVQLITSRIDDKILRTGARMPSIRQFSDQHQVSRFTVVEAYDRLVAGG 81 Query: 73 MLLARRGAGFFVAARAGQSGPRA--VFVPPEPVIDSAWLLSEMFADERVPIKAGCGWLPG 130 +L +RRG+GF+V RA PRA + + +D WL+ MF G G LP Sbjct: 82 LLESRRGSGFYVRDRAPMLTPRAQGLQSAAQQPVDVVWLVRNMFRQLPPQKMPGVGLLPN 141 Query: 131 KWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWSLELGIEQVLTTHG 190 +WL+ + + A R + R + YG P G+ PLRQ + + + +Q +TT G Sbjct: 142 EWLDGDLVANALRAVSRQNPNLLLQYGIPQGFLPLRQQLQLKMAELEISATPDQFVTTAG 201 Query: 191 ATQALDLVIRTMTQPGDTVLIDDPGYCNLIAMLRLAALNVIGVPRTPGGVDTDVLETLAR 250 TQ LDLV R QPGDT+ +DDPG+ + V+G+PR P G D L LA Sbjct: 202 VTQGLDLVARHYIQPGDTIFVDDPGWFLMFGSFAALGAKVVGIPRLPDGPDIAQLTALAE 261 Query: 251 THRPKMFFTTSVLQNPTGTSYTPACAMRVLQAAERHGFWVVEDDIFREL--GQATDPM-- 306 HRPK+F S+L NPT TS + A A +VL+ AE++ F +VEDDI+ ++ G A Sbjct: 262 LHRPKLFIINSILHNPTSTSLSAAKAFQVLKIAEQYDFMIVEDDIYCDMHPGAAVQAATR 321 Query: 307 LAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSEINERLVHN 366 +AALD L RVIY+G +SKT+A +LRVG+IA E+ARQ+ KM+ LT +EI ER+V+ Sbjct: 322 IAALDQLNRVIYLGGFSKTLAANLRVGFIATSPEIARQLADRKMLTALTTTEITERVVYR 381 Query: 367 VLTEGHHRRHVQTLNATLLNAQATLNAKLTEVGLTPFTAARGGMFSWATIEGCELSAREI 426 +L+EGH+R+H L L + ++ +G+ GMF+W + GC+ A + Sbjct: 382 ILSEGHYRKHTDRLRTKLNAVRDKTIRQMERIGIKIHFHTPAGMFAWTDV-GCD--ATIL 438 Query: 427 ADRARQKGIWLAPGDFFHLSAPHKTSFRFNVGYADVPELFDFL 469 A++A ++G LAPG F + T+ RFNV P + FL Sbjct: 439 AEKAMEQGYLLAPGSLFSPNQLPSTNMRFNVAAMADPGIMRFL 481 >gi|152980987|ref|YP_001354760.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 473 Score = 148 bits (374), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 133/465 (28%), Positives = 213/465 (45%), Gaps = 41/465 (8%) Query: 20 RLVEQVADGLAGLIEAGELRSGERLPSVRQFAHSHAIGASTVVEAYEQLVARGMLLARRG 79 +L E +A LA I+ G LR G+RLPSVRQ + S A+ STV +AY L ARG++ AR Sbjct: 2 KLYETLAAELAQSIQDGVLRIGDRLPSVRQASTSRAVSPSTVFQAYYLLEARGLIRARER 61 Query: 80 AGFFVAARAGQSGPRAVFVPPEP-----------VIDSAWLLSEMFAD----ERVPIKAG 124 +G++VA A + +PPEP +D + + E+ E VP + Sbjct: 62 SGYYVAGAAQK-------LPPEPEQASQPNEASSPVDISERVFEVLESAKMRELVPFGSA 114 Query: 125 CGWLPGKWLND-----EGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWSLE 179 P L + + +++ + G+P RQ+ ++L L Sbjct: 115 ---FPSPLLFPMARLARAMASSVQQLDPWSAVDDLTPGNPQLR---RQIALRYLAD-GLH 167 Query: 180 LGIEQVLTTHGATQALDLVIRTMTQPGDTVLIDDPGYCNLIAMLRLAALNVIGVPRTP-G 238 + ++++ T+GA AL+L + +T+PGD VL++ P + + L L+ I VP P Sbjct: 168 IHTDEIVITNGALDALNLCLAAVTRPGDAVLVESPTFYAALQALERNGLHAIEVPTHPRE 227 Query: 239 GVDTDVLETLARTHRPKMFFTTSVLQNPTGTSYTPACAMRVLQAAERHGFWVVEDDIFRE 298 G+D L H+PK + + QNP G+ ++ +H ++EDD++ E Sbjct: 228 GIDLAALARAIERHQPKACWLMTTFQNPLGSLMPDEKKRDLVTLLAQHEIPLIEDDVYGE 287 Query: 299 LGQATD-PMLA-ALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTN 356 L PM A A D V++ S+SK +AP RVG+ A R R + K+ TL Sbjct: 288 LYFGDKRPMPAKAFDSKGLVMHCSSFSKCLAPGYRVGWAAPGR-FTRAVARRKLTTTLAA 346 Query: 357 SEINERLVHNVLTEGHHRRHVQTLNATLLNAQATLNAKLTEV--GLTPFTAARGGMFSWA 414 S + + L +G + +H++ L TL Q + T T +GG F W Sbjct: 347 SAPAQAALATYLEKGGYDKHLRQLRHTLSVQQTQFMEAIARSFPAGTQATRPKGGYFLWL 406 Query: 415 TIEGCELSAREIADRARQKGIWLAPGDFFHLSAPHKTSFRFNVGY 459 + +++A E+ +A +GI LAPG F R N G+ Sbjct: 407 ELPA-KVNALELHRQALAQGISLAPGPIFSAHHGFTNCIRLNYGH 450 >gi|152980958|ref|YP_001351821.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 490 Score = 121 bits (304), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 111/457 (24%), Positives = 201/457 (43%), Gaps = 23/457 (5%) Query: 20 RLVEQVADGLAGLIEAGELRSGERLPSVRQFAHSHAIGASTVVEAYEQLVARGMLLARRG 79 +L E++A + LIE G R GERLPS+RQ + H + +TVV A+ L ++G++ + Sbjct: 2 KLYEKLAKDIEELIENGVFRPGERLPSIRQTSQHHRLSITTVVHAFLLLESKGVIESHPQ 61 Query: 80 AGFFV---AARAGQSGPRAVFVPPEPVIDSAWLLSEM-------FADERVPIKAGCGWLP 129 +G+FV A P+ + I S +S + ++ VP+ G + Sbjct: 62 SGYFVRVPPQSANGKVPQELRTSQPLAISSQVDVSHLVLSTLRSITNDAVPL--GSPYPD 119 Query: 130 GKWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAPL-RQLITQFLGHWSLELGIEQVLTT 188 E +++ I R V P G+ L RQ+ ++L + S + +++ T Sbjct: 120 PSLFPSEKINRYAYGITRRQTKWGVTDALPPGHPDLIRQIARRYLENGS-AIDPNEIVVT 178 Query: 189 HGATQALDLVIRTMTQPGDTVLIDDPGYCNLIAMLRLAALNVIGVPRTP-GGVDTDVLET 247 GAT+A++L ++ + + GD V ++ P + ++ + + I V P G+D LE Sbjct: 179 VGATEAINLCLQAVGKAGDIVAVESPTFYAMLHAIERMGMRAIEVATHPREGIDLAALEA 238 Query: 248 LARTHRPKMFFTTSVLQNPTGTSYTPACAMRVLQAAERHGFWVVEDDIFREL--GQATDP 305 + H+ QNP G +++ R V+E+D++ EL G Sbjct: 239 ILDQHQIAACMVMPNFQNPLGFQMPDEKKRALVELITRRQVPVIENDVYNELYFGDVHPT 298 Query: 306 MLAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSEINERLVH 365 L + D V++ S+SK++ + R+G+ R Q+ K + TLT I + + Sbjct: 299 SLKSYDTEGLVLHCASFSKSLTSAYRIGWAMPGR-YRDQVEKLKFLNTLTTPTIPQLAIA 357 Query: 366 NVLTEG---HHRRHVQTLNATLLNAQATLNAKLTEVGLTPFTAARGGMFSWATIEGCELS 422 L HH RH++ + A N + G T + +GG W + ++ Sbjct: 358 EYLEHDGYEHHLRHIRKVYAQQANIMRAAVKRFFPEG-TQTSEPQGGYVLWVELPP-QVD 415 Query: 423 AREIADRARQKGIWLAPGDFFHLSAPHKTSFRFNVGY 459 + ++ + A Q+GI + PG F + + R N Y Sbjct: 416 SMKLYELALQQGITIGPGYMFSATNGYNNFIRLNYSY 452 >gi|152980994|ref|YP_001352392.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 397 Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/324 (24%), Positives = 144/324 (44%), Gaps = 6/324 (1%) Query: 136 EGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWSLELGIEQVLTTHGATQAL 195 E + A ++ G + YG GYAPLR+ I L + +QVL G+ QAL Sbjct: 53 EHMKAAFDNVLSRQGKIALQYGPSDGYAPLREWIADSLSIEGATITPDQVLMVSGSQQAL 112 Query: 196 DLVIRTMTQPGDTVLIDDPGYCNLIAMLRLAALNVIGVPRTPGGVDTDVLETLARTHRPK 255 DL+ + + + VL++ P Y + + + VP G+ + ++ +A R Sbjct: 113 DLLGKVLIEENSKVLVETPSYLGALQAFSVYQPQFVSVPTDDYGLLPEAVDGIADGAR-- 170 Query: 256 MFFTTSVLQNPTGTSYTPACAMRVLQAAERHGFWVVEDDIFRELGQATDPMLAALD-GLQ 314 + + NPTG + + + +++ R G ++EDD + L +P+ L Sbjct: 171 LLYALPNFHNPTGRTMSVERRIALVETCARRGLPLIEDDPYGALSYRAEPLPKMLTMNPS 230 Query: 315 RVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSEINERLVHNVLTEGHHR 374 VIY+GS+SK + P +R+GY+ L R++ K L S++ + +V+ + +G Sbjct: 231 GVIYMGSFSKVLTPGIRLGYVVGPTPLIRKLEQAKQAADLHTSQLTQMVVYEAIKDGFLA 290 Query: 375 RHVQTLNATLLNAQATLNAKLTEVGL--TPFTAARGGMFSWATIEGCELSAREIADRARQ 432 H+ ++ N + L E + GGMF W T+ + ++ + A Sbjct: 291 EHIPSIRTLYANQCQVMLDALAEFAPEGVKWNKPEGGMFIWVTLPK-HIDCMQLLEEAIA 349 Query: 433 KGIWLAPGDFFHLSAPHKTSFRFN 456 + + PG F+ + P K + R + Sbjct: 350 QKVAFVPGAPFYANEPEKNTLRLS 373 >gi|152981144|ref|YP_001352922.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 477 Score = 119 bits (298), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 133/479 (27%), Positives = 202/479 (42%), Gaps = 39/479 (8%) Query: 1 MAKPARAPLQLDLQRNTSARLVEQVADGLAGLIEAGELRSGERLPSVRQFAHSHAIGAST 60 M KP A L L + R + Q+ IE G L +G+R+P+VR A + T Sbjct: 1 MKKPKPA-LDLSVDRTLELPMYLQICQRFKTAIERGHLHAGDRVPAVRALATEMNLARGT 59 Query: 61 VVEAYEQLVARGMLLARRGAGFFVAARAGQSGPRAVFVPPEPVIDSAWLLSEMFADERVP 120 V AY L G L R AG V+ Q P SA+L + A + P Sbjct: 60 VEMAYRILTDEGYLQVRGAAGTIVSPSLPQPAASKPLTPMPGQTVSAFLDHDGKAPK--P 117 Query: 121 IKAGCGWL---PGKWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWS 177 ++ G L P K N H+ +R ++GY P GY LR+ I +LG Sbjct: 118 LQLGLPALDAFPRKVWNRLVGHR-----LRGSEPARLGYPDPAGYDRLRERIATYLG--- 169 Query: 178 LELGI----EQVLTTHGATQALDLVIRTMTQPGDTVLIDDPGYCNLIAMLRLAALNVIGV 233 + G+ EQV T G L+L + +++ GD +DPGY ++A L V V Sbjct: 170 VSRGVTCLPEQVFITTGLRNTLELTLSSLSTSGDEFWFEDPGY--ILARPFLQNAAVKVV 227 Query: 234 PRTPGGVDTDVLETLARTHRPKMFFTTSVLQNPTGTSYTPACAMRVLQAAERHGFWVVED 293 P G V E + K T Q+P G + + M +L+ A G W++ED Sbjct: 228 PVPVDGNGLIVEEGKRLSPYAKFAMVTPSHQSPLGVTLSLERRMALLEWASEAGSWIIED 287 Query: 294 DI---FRELGQATDPMLAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKM 350 D FR G+ P L +LD RVIY G++SK + P LR+ Y+ + Sbjct: 288 DYDSEFRYQGRPL-PALKSLDRNDRVIYSGTFSKVMFPGLRLAYVVAPVSAVARFQSVSY 346 Query: 351 VLTLTNSEINERLVHNVLTEGHHRRHVQTLNATLLNAQATLNAKLTEV-------GLTPF 403 L + + V + + EGH RH++ + + + EV L P Sbjct: 347 NLNAGCPYLFQASVADFIAEGHFSRHLKKMRSLYAERRLVTQQVFQEVLGDRIRIDLRP- 405 Query: 404 TAARGGMFSWATIEGCELSAREIADRARQKGIWLAPGDFFHLSAPHKTSFRFNVGYADV 462 GG+ A + G + +AD+AR+ G+ L P ++++A K +G+A+V Sbjct: 406 ----GGLHMLAKL-GEHENDVLLADKAREAGLALHPLSRWYVNA--KPQQGLLLGFANV 457 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.137 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,099,182 Number of extensions: 44148 Number of successful extensions: 170 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 149 Number of HSP's successfully gapped: 8 Length of query: 472 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 385 Effective length of database: 899,382 Effective search space: 346262070 Effective search space used: 346262070 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)