BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4526.p (315 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980272|ref|YP_001353541.1| LysR family transcriptional reg... 169 2e-43 gi|152981622|ref|YP_001353551.1| LysR family transcriptional reg... 158 5e-40 gi|152980832|ref|YP_001354031.1| LysR family transcriptional reg... 153 1e-38 gi|152982683|ref|YP_001354316.1| LysR family transcriptional reg... 148 4e-37 gi|152979810|ref|YP_001352746.1| LysR family transcriptional reg... 147 1e-36 >gi|152980272|ref|YP_001353541.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 308 Score = 169 bits (428), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 102/303 (33%), Positives = 161/303 (53%), Gaps = 4/303 (1%) Query: 7 VDVLHELVTFVQVVEAGSFSEAARQQGMTPSAVSRQVARLEKMMGVSLFQRTTRQLRLTD 66 +D + +L F +V+ GS + AA++ G+TP +VS+++A +E + V L RTTR++ LT Sbjct: 1 MDGISDLAFFSLLVKRGSLAAAAQELGVTPPSVSKRLAGIESRLRVRLLNRTTRRISLTP 60 Query: 67 AGLDVLEHGRKMVSAARATLLAAEGHAGTPKGLVRMSAPKAFARRILQPVLLEFLKCYPE 126 G L G ++V+ A G T KGL+++SA F RR + P L F + YPE Sbjct: 61 EGEIYLADGTRLVAELEALEQRISGGNITAKGLLKVSATFGFGRRHITPQLSAFARLYPE 120 Query: 127 VDVHLLVVDRPVDPLREGVDLVIRLTDVPPQGMVARPLLPVRQLVLASPEYLAVHGAINH 186 V+V L + DRPV+ + +G D IR +P + AR + R+LV ASP YL HG Sbjct: 121 VEVQLHLTDRPVNLVEQGFDADIRFGQIPDARLSARKIADNRRLVCASPAYLQKHGTPLV 180 Query: 187 PEDLMSHSCLTLGE-EERDNRWRFVSGTESAEIIVAGRCAVNHSEMRLAAIEAGIGVGCV 245 P DL H+C+ L E +E W F SG + + V G + N E + G G+ Sbjct: 181 PRDLQQHNCILLRESDEIYGSWHFSSGIKQETVKVRGALSANDGECATSWALDGQGIVVR 240 Query: 246 PDFVANEAVAAGRVVRLLPEWNFDINYQGMAYLLFPASRYIAPKMRVLIDYLVGALQSQV 305 ++ + +GR+ +L EW Q Y++FP +++ K R L+D+++ A + Q Sbjct: 241 SEWDVAPYLRSGRLRAVLEEWQLP---QADIYIVFPTKNHLSAKTRALVDFMLQAFEGQR 297 Query: 306 AEK 308 E+ Sbjct: 298 RER 300 >gi|152981622|ref|YP_001353551.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 307 Score = 158 bits (399), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 103/308 (33%), Positives = 164/308 (53%), Gaps = 12/308 (3%) Query: 7 VDVLHELVTFVQVVEAGSFSEAARQQGMTPSAVSRQVARLEKMMGVSLFQRTTRQLRLTD 66 ++ + + FV+ EAGSFSEAAR+ G+T +AV + VARLE + V LFQR+TR+L LT+ Sbjct: 1 METMSSIECFVRSAEAGSFSEAARRLGLTSAAVGKNVARLEANLSVRLFQRSTRRLTLTE 60 Query: 67 AG---LDVLEHGRKMVSAARATLLAAEGHAGTPKGLVRMSAPKAFARRILQPVLLEFLKC 123 AG L + G ++ +A A L +A+G P G +++S F R + P+L +FL Sbjct: 61 AGERFLAEVSGGLAVIQSAVANLASADGQ---PAGTLKISMGTGFGRHYIVPLLGDFLTR 117 Query: 124 YPEVDVHLLVVDRPVDPLREGVDLVIRLTDVPPQGMVARPLLPVRQLVLASPEYLAVHGA 183 YP + +R VD + EG D I P G+VAR L P +++A+P+Y H Sbjct: 118 YPAITPDWHFDNRRVDMIAEGFDAAIGGGFELPPGVVARTLGPSHGILVAAPDYFDTHTP 177 Query: 184 INHPEDLMSHSCLTLGEEE--RDNRWRFVS-GTESAEIIVAGRCAVNHSEMRLAAIEAGI 240 + P +L H + + + R W + G E A + + R ++ + A ++G+ Sbjct: 178 LASPSELGQHDGIFIRSPQTGRIRPWSLRNKGNEQAPVAMRVRMTMSDPDAACEAAQSGL 237 Query: 241 GVGCVPDFVANEAVAAGRVVRLLPEWNFDINYQGMAYLLFPASRYIAPKMRVLIDYLVGA 300 G+ V A + +GR+ R+LP+W DI G L FPA + + K RV +DY+V Sbjct: 238 GIALVSVPNALRYLESGRLKRVLPDWYVDI---GTLSLYFPAQKLLPAKTRVFVDYVVEH 294 Query: 301 LQSQVAEK 308 +++ K Sbjct: 295 FRTEKFAK 302 >gi|152980832|ref|YP_001354031.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 304 Score = 153 bits (387), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 94/308 (30%), Positives = 159/308 (51%), Gaps = 14/308 (4%) Query: 4 NDLVDVLHELVTFVQVVEAGSFSEAARQQGMTPSAVSRQVARLEKMMGVSLFQRTTRQLR 63 NDL D L F +V+ GS + AR+ G+TP AV++++A LE+ +GV L RTTR + Sbjct: 2 NDLSD----LAFFSVLVKQGSLAAVARELGVTPPAVTKRLANLEQRLGVRLLNRTTRTMS 57 Query: 64 LTDAGLDVLEHGRKMVSAARATLLAAEGHAGTPKGLVRMSAPKAFARRILQPVLLEFLKC 123 +T G L G ++++ A PKGL+R++A F RR + P + +F++ Sbjct: 58 VTHEGEIYLAEGARILTEIEELERAVSRSRAVPKGLLRINATFGFGRRHIAPAVSDFIEK 117 Query: 124 YPEVDVHLLVVDRPVDPLREGVDLVIRLTDVPPQGMVARPLLPVRQLVLASPEYLAVHGA 183 YPE++V L + DRP + + + D+ IR+ ++P ++AR + R+L+ A+P Y+ HG Sbjct: 118 YPEIEVQLQLSDRPANLIDQAFDIGIRIGEMPDARIIARKIAANRRLLCAAPAYIKRHGT 177 Query: 184 INHPEDLMSHSCLTLGEEERD-NRWRFVSGTESAEIIVAGRCAVNHSEMRLAAIEAGIGV 242 + P DL C+ L E + W G I V G + N E LA AG G+ Sbjct: 178 PSVPRDLQKLQCIVLRENDAAYGSWHLHKGKRQESIKVRGALSSNDGETTLAWALAGHGI 237 Query: 243 GCVPDFVANEAVAAGRVVRLLPEWNF---DINYQGMAYLLFPASRYIAPKMRVLIDYLVG 299 + + +GR+V +L +W+ DI Y ++P ++ K+ +D++ Sbjct: 238 LMRSQWDVAAYLRSGRLVEVLADWSLPPSDI------YAVYPERLNLSAKVTAFVDFVSA 291 Query: 300 ALQSQVAE 307 S+++E Sbjct: 292 RFASRLSE 299 >gi|152982683|ref|YP_001354316.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 299 Score = 148 bits (374), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 89/298 (29%), Positives = 161/298 (54%), Gaps = 7/298 (2%) Query: 7 VDVLHELVTFVQVVEAGSFSEAARQQGMTPSAVSRQVARLEKMMGVSLFQRTTRQLRLTD 66 +D L EL F+ ++++GS A+R+ +P A++R + LE+ +G L +RTTR L T+ Sbjct: 1 MDRLDELEIFIAILDSGSLVAASRKLRRSPPAITRALGTLEERIGTRLIERTTRHLVATE 60 Query: 67 AGLDVLEHGRKMVSAARATLLAAEGHAGTPKGLVRMSAPKAFARRILQPVLLEFLKCYPE 126 AGL + + R++++ T+ E + +G ++++AP F RR + P++ +L YPE Sbjct: 61 AGLHLAQQARRLLADYEQTV--QEDASAPLRGTLKVTAPVVFGRRHVAPIVNSYLDQYPE 118 Query: 127 VDVHLLVVDRPVDPLREGVDLVIRLTDVPPQGMVARPLLPVRQLVLASPEYLAVHGAINH 186 + V L+ DR +D + EG+D+ +R+ + MVAR + V+ +++ASP+Y+ G Sbjct: 119 MRVELITNDRNLDLIEEGIDVGVRIGSLADTSMVARRVGQVQSVLVASPDYIERRGEPKS 178 Query: 187 PEDLMSHSCLTLGEEERDNRWRFVSGTESAEIIVAGRCAVNHSEMRLAAIEAGIGVGCVP 246 D+ H + E+ WRF + + R VN + L A +AG G+ V Sbjct: 179 IADIAHHDVIFTAIREKAPEWRFRHNGREQIVALTPRLIVNEIDAVLLAAKAGRGLARVL 238 Query: 247 DFVANEAVAAGRVVRLLPEWNF-DINYQGMAYLLFPASRYIAPKMRVLIDYLVGALQS 303 + + + AG ++R+LP+ + D+ Q L+ P++R +APK R +D + L Sbjct: 239 SYQVADELQAGTLLRVLPKLDAPDLPVQ----LIVPSARLMAPKSRAFLDLAIDKLSK 292 >gi|152979810|ref|YP_001352746.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 361 Score = 147 bits (370), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/293 (30%), Positives = 149/293 (50%), Gaps = 4/293 (1%) Query: 7 VDVLHELVTFVQVVEAGSFSEAARQQGMTPSAVSRQVARLEKMMGVSLFQRTTRQLRLTD 66 D+ EL FV + G+ S AAR +TP A ++++A+LE +GV L RTTR + LT Sbjct: 59 TDITSELEFFVLIARLGNLSAAARALDITPPAATKRLAQLESRLGVRLVNRTTRSISLTS 118 Query: 67 AGLDVLEHGRKMVSAARATLLAAEGHAGTPKGLVRMSAPKAFARRILQPVLLEFLKCYPE 126 G L + ++++ + A G P+GL+R++A F R + P++ EF++ YP+ Sbjct: 119 EGEIYLGYAARILAEVKEMEDAVSSGGGAPRGLLRVNATLGFGRTAIAPLVSEFVRRYPQ 178 Query: 127 VDVHLLVVDRPVDPLREGVDLVIRLTDVPPQGMVARPLLPVRQLVLASPEYLAVHGAINH 186 V+V V D+P+D + G DL IR +P + AR L+ R+ + ASP YL HG Sbjct: 179 VEVQFEVSDKPIDLVENGFDLAIRFGTLPDTRLNARKLMSNRRFLCASPIYLERHGTPQT 238 Query: 187 PEDLMSHSCLTLGE-EERDNRWRFVSGTESAEIIVAGRCAVNHSEMRLAAIEAGIGVGCV 245 DL H C+T + +E WRF + I V + N ++ L G+ Sbjct: 239 LADLSRHRCITHRQNDEAAATWRFTRDGRNEVIKVESALSSNDGDIVLGWALDAHGILIR 298 Query: 246 PDFVANEAVAAGRVVRLLPEWNFDINYQGMAYLLFPASRYIAPKMRVLIDYLV 298 ++ + V +GR+ +LP++ + ++ +P R + + R ID+L+ Sbjct: 299 SEWDLAKYVKSGRLKIVLPDY---VLPSADLFVYYPNRRNQSTRARAFIDFLI 348 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 705,074 Number of extensions: 29085 Number of successful extensions: 189 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 34 Length of query: 315 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 232 Effective length of database: 914,170 Effective search space: 212087440 Effective search space used: 212087440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)