BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4515.p (235 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino a... 166 2e-42 gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino a... 148 2e-37 gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC tran... 146 1e-36 gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino a... 131 3e-32 gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino a... 128 4e-31 >gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 232 Score = 166 bits (419), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 95/227 (41%), Positives = 144/227 (63%), Gaps = 11/227 (4%) Query: 15 YRASVVLRGLSLEIAQGEAVALLGKNGMGKSTLLKTVMGYLGKQSGAVHLHGSNITRMSP 74 Y A+ LRG+SL + +G+ ++LLG+NG+GK+TLLK +MG L +G V L G +IT++ P Sbjct: 11 YGAAHTLRGISLSVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAAGNVSLDGRDITKLKP 70 Query: 75 HRIARLGVAYAAQENALFAELSIADNLRLGLTRPALFEERFAAIEG----LFPVFRSRLQ 130 H+ A LG+AY Q +FA L++ +NL +G+ + ++ + I+G LFPV + L Sbjct: 71 HQRAALGIAYVPQGREIFARLTVEENLLMGMATKS--GKKASVIKGEVYELFPVLKEMLH 128 Query: 131 QYAGTLSGGEQKMLLLARALMMRPALILLDEITEGLQPSVIDRLAH--ALLEERRQHGTT 188 + G LSGG+Q+ L +ARAL+ P LI+LDE TEG+QPS+I + +LL ER G Sbjct: 129 RRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLRERGDIG-- 186 Query: 189 LLLVEQNVPFALQVADRYLILKQGELVEEGDAKHAGATETVFAHLRV 235 +LL EQ FA ++AD +++L +GE+V G + + V HL V Sbjct: 187 ILLCEQYFDFARELADTFVVLSRGEVVASGSQQEM-DDDNVKKHLAV 232 >gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 249 Score = 148 bits (374), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 81/218 (37%), Positives = 134/218 (61%), Gaps = 4/218 (1%) Query: 6 LVMKDITSGYRASVVLRGLSLEIAQGEAVALLGKNGMGKSTLLKTVMGYLGKQSGAVHLH 65 L +++IT Y A+ + +SLE+ +GE V L+G NG GKST L+ + G G++ ++ Sbjct: 17 LKIEEITVRYGATTGINKISLEVHEGEIVTLIGANGAGKSTTLRAINGLEPLAHGSIRMN 76 Query: 66 GSNITRMSPHRIARLGVAYAAQENALFAELSIADNLRLGLTR---PALFEERFAAIEGLF 122 G ++ SP + G+++ + +F +L++ +N+ +G R A + + F Sbjct: 77 GHLVSGASPAEVIDHGISHCPEGRRVFPQLTVRENMEMGAYRRKDKAKVRDDMERMFDKF 136 Query: 123 PVFRSRLQQYAGTLSGGEQKMLLLARALMMRPALILLDEITEGLQPSVIDRLAHALLEER 182 P R R+QQ AGTLSGGEQ+ML +ARALM RP L++ DE + GL P++++++ +L+ E Sbjct: 137 PRLRERVQQVAGTLSGGEQQMLAIARALMSRPRLVMFDEPSLGLAPNIVEQI-FSLIREI 195 Query: 183 RQHGTTLLLVEQNVPFALQVADRYLILKQGELVEEGDA 220 R GTT+L+VEQN AL + DR +L+ G +V +G + Sbjct: 196 RSEGTTVLIVEQNAYAALAMCDRGYLLENGHIVTQGSS 233 >gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 231 Score = 146 bits (368), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/226 (39%), Positives = 133/226 (58%), Gaps = 8/226 (3%) Query: 6 LVMKDITSGYRASVVLRGLSLEIAQGEAVALLGKNGMGKSTLLKTVMGYLGKQSGAVHLH 65 L +K++ + Y S VL G+ + I GE V+LLG+NG G+ST +K MG + +G + Sbjct: 5 LEIKNLHAFYGKSHVLHGIDITIQSGEIVSLLGRNGAGRSTTVKAAMGMVAA-TGTIRFK 63 Query: 66 GSNITRMSPHRIARLGVAYAAQENALFAELSIADNLRLGLTRPALFEERFAAIE--GLFP 123 G I + +RIAR G+ Y A+ +F LS+A NL LG A + R++A + LFP Sbjct: 64 GKEILGLPTYRIARQGLGYVAESREIFPTLSVAQNLVLG----AQAKSRWSADDMYRLFP 119 Query: 124 VFRSRLQQYAGTLSGGEQKMLLLARALMMRPALILLDEITEGLQPSVIDRLAHALLEERR 183 + R AG LSGGEQ+ML L R LM P LI++DE TEGL P ++ +A+ L+E Sbjct: 120 RLQERQHVQAGVLSGGEQQMLALCRTLMGDPELIMIDEPTEGLAPQMVALVAN-FLQELV 178 Query: 184 QHGTTLLLVEQNVPFALQVADRYLILKQGELVEEGDAKHAGATETV 229 Q G ++LL+EQ + AL+++ R ++ G++V EG + A V Sbjct: 179 QRGVSVLLIEQKLAIALKISQRVYVMGHGQVVFEGSPQDLQADAAV 224 >gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 235 Score = 131 bits (330), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 127/229 (55%), Gaps = 4/229 (1%) Query: 4 SALVMKDITSGYRASVVLRGLSLEIAQGEAVALLGKNGMGKSTLLKTVMGYLGKQSGAVH 63 S L++K +T+GY VL +S+E+A G+ +LG NG GKSTL+++++G + G + Sbjct: 2 SNLIVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEIL 61 Query: 64 LHGSNITRMSPHRIARLGVAYAAQENALFAELSIADNLRLGL---TRPALFEERFAAIEG 120 G N+ H I G++ + +F +++A+NL LG + + +R A + Sbjct: 62 WGGKNLAGEKTHNIIASGISCIPEGRKVFPRMTVAENLALGAFLESSSTVVRDRLARVYE 121 Query: 121 LFPVFRSRLQQYAGTLSGGEQKMLLLARALMMRPALILLDEITEGLQPSVIDRLAHALLE 180 +FP + R Q AGT+SGGEQ M+ + R LM P L+++DE + GL P + +++ Sbjct: 122 IFPRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPKLLVIDEPSLGLSPLYVKE-NFKVIK 180 Query: 181 ERRQHGTTLLLVEQNVPFALQVADRYLILKQGELVEEGDAKHAGATETV 229 + G T+LLVEQN L ++ +L QG ++ +G A+ + + V Sbjct: 181 QINALGITVLLVEQNARQTLAISHYGYVLSQGRVMAQGTAEALSSNDDV 229 >gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 128 bits (321), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 125/231 (54%), Gaps = 14/231 (6%) Query: 1 MKQSALVMKDITSGYRASVVLRGLSLEIAQGEAVALLGKNGMGKSTLLKTVMGYL--GKQ 58 M + L + + Y ++G+ LE+ +GE + L+G NG GK+T LK + G L + Sbjct: 1 MTDTVLKISGLKVAYGGIEAVKGVDLEVHKGELITLIGANGAGKTTTLKAITGTLPNCRV 60 Query: 59 SGAVHLHGSNITRMSPHRIARLGVAYAAQENALFAELSIADNLRLG-LTRP------ALF 111 G + G I + + R +A + +F +SI +NL +G TR A Sbjct: 61 EGHIEYAGQPIKGLHSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRDDKDGIAADI 120 Query: 112 EERFAAIEGLFPVFRSRLQQYAGTLSGGEQKMLLLARALMMRPALILLDEITEGLQPSVI 171 ++ F G+FP + R Q AGTLSGGEQ+ML +ARALM P L+LLDE + GL P ++ Sbjct: 121 DKWF----GVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPELLLLDEPSMGLSPIMV 176 Query: 172 DRLAHALLEERRQHGTTLLLVEQNVPFALQVADRYLILKQGELVEEGDAKH 222 +++ + Q G T+LLVEQN ALQ A+R +++ G + GDA+ Sbjct: 177 EKIFEVIRTVSAQ-GITILLVEQNAKLALQAANRAYVMESGLVTMHGDAQQ 226 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 480,216 Number of extensions: 18012 Number of successful extensions: 225 Number of sequences better than 1.0e-08: 60 Number of HSP's gapped: 159 Number of HSP's successfully gapped: 63 Length of query: 235 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 155 Effective length of database: 925,261 Effective search space: 143415455 Effective search space used: 143415455 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)