BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4514.p (603 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980952|ref|YP_001353499.1| branched-chain amino acid ABC t... 148 8e-37 gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino a... 127 2e-30 gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino a... 125 7e-30 gi|152980928|ref|YP_001351786.1| branched-chain amino acid trans... 120 3e-28 gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino a... 119 4e-28 >gi|152980952|ref|YP_001353499.1| branched-chain amino acid ABC transporter, ATP-binding protein [Janthinobacterium sp. Marseille] Length = 288 Score = 148 bits (374), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 140/246 (56%), Gaps = 10/246 (4%) Query: 356 IHMRNVAKNFGPLKVLRGIDFTARAGELVGLIGPNGAGKTTLMRCMSDGAERSAGSVALC 415 +++ ++ +F K + ++ GEL +IGPNGAGKTT+M ++ G R A Sbjct: 46 LYLEDITVSFDGFKAINKLNLDISVGELRCIIGPNGAGKTTMMDVIT-GKTRPTSGTAFF 104 Query: 416 GS--DIAKLPPQACVHLGLGRKFQNANIFESLTVAQCLRIARVRLQR--PALFKRADTLH 471 G D+ KL H G+GRKFQ +FE TV + L +A +R LF R ++ Sbjct: 105 GQSIDLTKLTEYEIAHAGIGRKFQRPTVFEQHTVFENLELAMKMDKRVKTTLFARLNSEQ 164 Query: 472 LPPYALHVMRATGLDGMLDSIAGDLSHGQQQALELAMVLALEPRVVLLDEPTAGLTKTER 531 + +++ L+G IAG LSHGQ+Q LE+ M+L EP+++LLDEP AG++ E Sbjct: 165 IGKIE-EILKLIRLNGQEHRIAGLLSHGQKQWLEIGMLLMQEPQLILLDEPVAGMSDAET 223 Query: 532 TQIGAVLSSLAFKYRLCCLLVEHDLDFVQQIAT--RIVVLHQGTIIMQGSFEEVVNSELV 589 + +L+ L K+ ++VEHD+ FV++IA ++ VLH+G+++ +GS ++V E V Sbjct: 224 ARTAELLNELRGKH--SIMVVEHDMGFVEEIAQGDKVTVLHEGSVLAEGSMQQVQADERV 281 Query: 590 KTIYSG 595 +Y G Sbjct: 282 IEVYLG 287 >gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 264 Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 87/251 (34%), Positives = 132/251 (52%), Gaps = 11/251 (4%) Query: 355 AIHMRNVAKNFGPLKVLRGIDFTARAGELVGLIGPNGAGKTTLMRCMSDGAERSAGSVAL 414 A+ ++ V L + F AG++V LIGPNGAGKTT +S + ++G V L Sbjct: 9 ALELQGVTMRIAGLTAVDNASFIVPAGKIVSLIGPNGAGKTTTYNVISGYMKPTSGRVKL 68 Query: 415 CGSDIAKLPPQACVHLGLGRKFQNANIFESLTVAQCLRIA-RVRLQ--------RPALFK 465 G DI + P+ LGL R FQ +IF + TVA+ + A ++ Q R F+ Sbjct: 69 FGHDITGMAPEQISQLGLVRSFQRTSIFSACTVAENILTALHLKGQCGVLQALLRTQKFR 128 Query: 466 RADTLHLPPYALHVMRATGLDGMLDSIAGDLSHGQQQALELAMVLALEPRVVLLDEPTAG 525 R + L A ++ GL +++A +LS+G+Q+ L + + LA +P+V+LLDEP AG Sbjct: 129 REEA-DLRTQANDLLAFLGLSARANTLASNLSYGEQRLLGVGLALAAKPKVLLLDEPAAG 187 Query: 526 LTKTERTQIGAVLSSLAFKYRLCCLLVEHDLDFVQQIATRIVVLHQGTIIMQGSFEEVVN 585 L +E ++ + + + LLVEHD+ V I+ IVVL+ G +I GS E+ N Sbjct: 188 LNPSETEAFKEMVRRIG-QSGVTVLLVEHDMHMVMSISDHIVVLNYGRLIATGSPSEIQN 246 Query: 586 SELVKTIYSGS 596 V Y GS Sbjct: 247 DPEVIRAYLGS 257 >gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 251 Score = 125 bits (314), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 133/247 (53%), Gaps = 5/247 (2%) Query: 355 AIHMRNVAKNFGPLKVLRGIDFTARAGELVGLIGPNGAGKTTLMRCMSDGAERSAGSVAL 414 A+ +R V K FG +++ G G+ + LIGPNGAGK+TL +S S+G + L Sbjct: 5 ALELREVRKRFGNAEIICGASLQLPQGQRLALIGPNGAGKSTLFNLISGRFPLSSGDILL 64 Query: 415 CGSDIAKLPPQACVHLGLGRKFQNANIFESLTVAQCLRIARVRL--QRPALFKRADTLH- 471 GS IA P GL R FQ NIF L+V + LR A + R + ++R + L Sbjct: 65 NGSSIAGQKPYQINRRGLSRSFQITNIFHRLSVFENLRCAVLWSLGYRYSFWQRLNGLQD 124 Query: 472 LPPYALHVMRATGLDGMLDSIAGDLSHGQQQALELAMVLALEPRVVLLDEPTAGLTKTER 531 + A VM GL + A LS+ +Q+ALE+ + +A +V+LLDEPTAG++++E Sbjct: 125 VNQRAEQVMEEIGLHKRRNVEADLLSYAEQRALEIGITIAGGAQVLLLDEPTAGMSRSES 184 Query: 532 TQIGAVLSSLAFKYRLCCLLVEHDLDFVQQIATRIVVLHQGTIIMQGSFEEVVNSELVKT 591 ++ ++ L L+VEHD+D V +A RI VL G II + + + N+ LV+ Sbjct: 185 DAAVELIRKISAGKTL--LMVEHDMDVVFGLADRIAVLVYGEIIACDTPDNIRNNPLVQQ 242 Query: 592 IYSGSTH 598 Y G+ Sbjct: 243 AYLGTVE 249 >gi|152980928|ref|YP_001351786.1| branched-chain amino acid transporter ATP-binding protein [Janthinobacterium sp. Marseille] Length = 255 Score = 120 bits (300), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 126/245 (51%), Gaps = 4/245 (1%) Query: 356 IHMRNVAKNFGPLKVLRGIDFTARAGELVGLIGPNGAGKTTLMRCMSDGAERSAGSVALC 415 +H +++++G L +D + GE V ++GPNGAGKTTL+ ++ + + G V Sbjct: 8 LHATQISRHYGDFIALHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTTGHVNFD 67 Query: 416 GSDIAKLPPQACVHLGLGRKFQNANIFESLTVAQCLRIARVRL--QRPALFKRA-DTLHL 472 G++IA + GL R FQ +IF LTV + + ++ QR F + + Sbjct: 68 GANIAGVGAVDLATRGLARAFQLTSIFPELTVRETIAVSACSYLNQRWNGFGHLFGSRKI 127 Query: 473 PPYALHVMRATGLDGMLDSIAGDLSHGQQQALELAMVLALEPRVVLLDEPTAGLTKTERT 532 + A GL LD+ G L HG+++ L++A AL P+V+LLDEPTAG++ ++ Sbjct: 128 NDIVVRTADAFGLSPWLDTKGGSLPHGRRKLLDVASAFALHPKVMLLDEPTAGVSTADKH 187 Query: 533 QIGAVLSSLAFKYRL-CCLLVEHDLDFVQQIATRIVVLHQGTIIMQGSFEEVVNSELVKT 591 + L A + +LVEHD+D V + +TRIV + G I +E +E V + Sbjct: 188 GVMETLLRAAKHMGIEAIMLVEHDMDLVSRYSTRIVAMQGGKKIADLPRDEFFANEEVVS 247 Query: 592 IYSGS 596 I G Sbjct: 248 IVVGK 252 >gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 232 Score = 119 bits (299), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 122/237 (51%), Gaps = 8/237 (3%) Query: 356 IHMRNVAKNFGPLKVLRGIDFTARAGELVGLIGPNGAGKTTLMRCMSDGAERSAGSVALC 415 + + + + +G LRGI + G+ + L+G NG GKTTL++C+ +AG+V+L Sbjct: 2 LQVNQLNQYYGAAHTLRGISLSVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAAGNVSLD 61 Query: 416 GSDIAKLPPQACVHLGLGRKFQNANIFESLTVAQCLRIARVRLQRPALFKRADTLHLPPY 475 G DI KL P LG+ Q IF LTV + L + K+A + Y Sbjct: 62 GRDITKLKPHQRAALGIAYVPQGREIFARLTVEENLLMGMA----TKSGKKASVIKGEVY 117 Query: 476 ALHVMRATGLDGMLDSIAGDLSHGQQQALELAMVLALEPRVVLLDEPTAGLTKTERTQIG 535 L + L ML GDLS GQQQ L +A L EP++++LDEPT G+ + IG Sbjct: 118 ELFPV----LKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIG 173 Query: 536 AVLSSLAFKYRLCCLLVEHDLDFVQQIATRIVVLHQGTIIMQGSFEEVVNSELVKTI 592 V+S L + + LL E DF +++A VVL +G ++ GS +E+ + + K + Sbjct: 174 RVISLLRERGDIGILLCEQYFDFARELADTFVVLSRGEVVASGSQQEMDDDNVKKHL 230 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.140 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,104,166 Number of extensions: 39514 Number of successful extensions: 419 Number of sequences better than 1.0e-08: 62 Number of HSP's gapped: 341 Number of HSP's successfully gapped: 63 Length of query: 603 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 514 Effective length of database: 891,988 Effective search space: 458481832 Effective search space used: 458481832 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 132 (55.5 bits)