BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4512.p (387 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980511|ref|YP_001353496.1| branched-chain amino acid trans... 154 7e-39 gi|152981476|ref|YP_001354873.1| ABC-type branched-chain amino a... 89 5e-19 gi|152981674|ref|YP_001351789.1| ABC-type branched-chain amino a... 69 5e-13 gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino a... 67 2e-12 gi|152980080|ref|YP_001353239.1| ABC transporter leu/Ile/val-bin... 63 3e-11 >gi|152980511|ref|YP_001353496.1| branched-chain amino acid transport system substrate-binding protein [Janthinobacterium sp. Marseille] Length = 417 Score = 154 bits (390), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 122/381 (32%), Positives = 190/381 (49%), Gaps = 21/381 (5%) Query: 11 GAFVLFAAMTV-QAQAADPIRIGVAVGLSGANSVVAPAVVQSSQLAVDEINAAGGILGRK 69 GAF L + + A AAD I++G+ LSG ++ ++ + + +DEINA GG++G+K Sbjct: 13 GAFTLATSSWLPSAFAADTIKVGILHSLSGTMAISETSLKDVALMTIDEINANGGVMGKK 72 Query: 70 LELDIVDDASG-AVGAQKAFDTLVFQKKVNAVIAMETSAARNAALPVISRGKLPYIYTSF 128 LE IVD AS + A+KA L+ Q KV+ V TS +R + LPV Y Sbjct: 73 LEAVIVDPASNWPLFAEKA-RQLISQDKVSVVFGCWTSVSRKSVLPVFKELNSLLFYPVQ 131 Query: 129 YEGRSCNKWMYVNGWVPEQQVAPVVDYFTKSK--HAKTFFLVGSDYAFGRGMLEFTKKYI 186 YEG K ++ G P QQ P +Y + AK F L+G+DY + R + + ++ Sbjct: 132 YEGEELEKNVFYTGAAPNQQAIPATEYLMSKEGGGAKRFVLLGTDYVYPRTTNKILRAFL 191 Query: 187 EQKGGK--VIGEEYLPIDGSDWTTVVSKIR--SSKPDALISATAGGAPNVSLAKQLKGAG 242 KG + I E Y P SD+ T+V+ I+ S+ + +T G NV K+L AG Sbjct: 192 HSKGVRDSDIDEVYTPFGHSDYQTIVANIKKFSAGGKTAVISTINGDSNVPFYKELGNAG 251 Query: 243 LT---LPYGNLAVDEGTAQTMGDAADGLYMSA-SYLTGIDTPENKKFME-----ALKKKF 293 L +P +V E + + +++A +Y + P N F++ A+ KK Sbjct: 252 LKATDVPVVAFSVGEEELRGVDTKPLVGHLAAWNYFESVKNPVNAGFIKKWKDYAVAKKL 311 Query: 294 -GADMKTPNELSEPQYEAFYLFKAAVEKAGSTDNDKVIKALGEVSFNGPRGL-VAMNKS- 350 A N+ E Y Y++K AVEKA STD DKVI A+ +F P G + M+K+ Sbjct: 312 PNAKTVVTNDPMEATYVGLYMWKQAVEKAKSTDTDKVIAAMAGQTFKAPSGYTLEMDKTN 371 Query: 351 RHTPLSMRLGQVQHDGTIKIL 371 H + +G+++ DG ++ Sbjct: 372 HHLHKPVMIGEIKADGQFNVV 392 >gi|152981476|ref|YP_001354873.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 423 Score = 89.0 bits (219), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 102/388 (26%), Positives = 171/388 (44%), Gaps = 36/388 (9%) Query: 12 AFVLFAAMTVQAQAADPIRIGVAVGLSGANSVVAPAVVQSSQLAVDEINAAGGIL----G 67 A VL +V AQAA+PIRIG+ G+SGA + AVV++ QLA+D +NA GG+ Sbjct: 10 ATVLLCVCSV-AQAAEPIRIGMIDGMSGAFANAGEAVVRNLQLAIDAVNARGGVRLPDGA 68 Query: 68 RKLELDIVDDASGAVGAQKAFDTLVFQK------KVNAVIAMETSAARNAALPVISRGKL 121 L L+I D+ SG + F L Q+ ++ +A A N S ++ Sbjct: 69 HPLALEIFDNKSGVEESLLEFKRLADQRIPFMVQGNSSAVAAALLDAVNKHNQRASDNRV 128 Query: 122 PYIYTSFYE----GRSCNKWMYVNGWVPEQQVAPVVDYFTKSKHAKTFFLVGSDYAFGRG 177 ++ S + C+ W + + ++ + + + AK +L+G DY+FGR Sbjct: 129 LFLNYSAVDPALTNEKCSYWHFRFDANADMRMHALTEVIKRDARAKRVYLIGQDYSFGRL 188 Query: 178 MLEFTKKYIEQKGG--KVIGEEYLPIDG-SDWTTVVSKIRSSKPDALISATAGGAPNVSL 234 + + + + K +++G+E PI D+ ++KI++S DA+IS G + L Sbjct: 189 VAQAARTQLAAKRPDIQIVGDELHPIGKIKDFAPYIAKIKASGADAVISGNWGNDLTL-L 247 Query: 235 AKQLKGAGLTLP----YGNLAVDEGTAQTMGDA-ADGLYMSASYL----TGIDTPENKKF 285 K K GL YGN G +GDA D + A + G+ + +F Sbjct: 248 VKAAKEFGLNTKFYTFYGN---GLGAPAAIGDAGVDRVRAVAEWHPNVGDGMADSASGRF 304 Query: 286 MEALKKKFGADMKTPNELSEPQYEAFYLFKAAVEKAGSTDNDKVIKALGEVSFNGPRGLV 345 A ++++ L + + A+EKA STD V +AL + Sbjct: 305 YSAFRQRYPQPKDDYVHLR--MHIMIEMLATAIEKARSTDARAVAQALEGAHYRNAFHDA 362 Query: 346 AMNKSRH---TPLSMRLGQVQHDGTIKI 370 M S H PL + + + + DG ++ Sbjct: 363 TMRASDHQLIQPLYVSVMRRKSDGGMRF 390 >gi|152981674|ref|YP_001351789.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 431 Score = 68.9 bits (167), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 78/316 (24%), Positives = 139/316 (43%), Gaps = 34/316 (10%) Query: 28 PIRIGVAVGLSGANSVVAPAVVQSSQLAVDEINAAGGILGRKLELDIVDDASGAVGAQKA 87 P+R+G+ G + ++ + INAAGGI GRK+EL I ++ S + Sbjct: 41 PLRVGIIAPRGGVAGTIGECGLRGVEWTTARINAAGGIGGRKVELVIQEETSPKDTIDR- 99 Query: 88 FDTLVFQKKVNAVIAMETSAARNAALPVISRGKLPYIYTSFYEGRSCN---------KWM 138 F LV Q+KV+ V + +S A P ++P I F++G + + K++ Sbjct: 100 FRKLVLQEKVDCVQGIVSSGVSLALAPAAEDSRMPTI---FWDGTTQDGVKETMPKPKYV 156 Query: 139 YVNGWVPEQQVAPVVDYFTKSKHAKTFF----LVGSDYAFGRGMLEFTKKYIEQKG--GK 192 + + + + V+ KH K F V DY++GR + +++ G + Sbjct: 157 FRS---TDNECEAVMASLLAIKHFKGKFKRIACVNPDYSYGRNTWTAFQALLKKYGIEHE 213 Query: 193 VIGEEYLPIDGSDWTTVVSKIRSSKPDALISATAGGAPNVSLAKQLKGAGLT------LP 246 V+ E++ I D T+ V+ ++++KPD + S+ V + KQ AGLT LP Sbjct: 214 VVSEQWSKIGNLDLTSNVAALKAAKPDLIFSSLLFADLPVFM-KQAHNAGLTEGTRFVLP 272 Query: 247 YGNLAVDEGTAQTMGDAADGLYMSASYLTGIDTPENKKFMEALKKKFGADMKT-PNELSE 305 + TA +G+ + + D P+ + K + K P+ ++ Sbjct: 273 AAGW---QHTAMKKEFTPEGIVWGHNTMY-FDDPKASATQKEFVKWYADKYKDYPHWEAD 328 Query: 306 PQYEAFYLFKAAVEKA 321 Y + ++KA VEKA Sbjct: 329 RAYFSMMVYKAGVEKA 344 >gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 385 Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/215 (24%), Positives = 104/215 (48%), Gaps = 10/215 (4%) Query: 13 FVLFAAMTVQAQAADPIRIGVAVGLSGANSVVAPAVVQSSQLAVDEINAAGGILGRKLEL 72 +FAA + AQ + I+IGV L+G + V +++A D +N GG+LG+K++L Sbjct: 15 LAMFAATSAYAQ--ETIKIGVTEPLTGPVAAAGTYVTNGARIAADYVNQNGGVLGKKIQL 72 Query: 73 DIVDDASGAVGAQKAFDTLVFQKKVNAVIAMETSAARNAALPVISRGKLPYIYTSFYEGR 132 I D+ S A + + L+ + KV ++ +S A +P + ++P + + + Sbjct: 73 VIEDNKSNPREAVNSVEKLILKDKVPVLMGAWSSTFTLAIMPKLIEYEVPLVVEAASSSK 132 Query: 133 ---SCNKWMYV---NGWVPEQQVAPVVDYFTKSKHAKTFFLVGSDYAFGRGMLEFTKKYI 186 + N W++ + Q + V+D + + F +V +D+ G +EF KK + Sbjct: 133 ITTAGNPWVFRTSPTSAMEAQAFSKVIDGYNPAIKKADFLVVNNDWGLG-AAVEF-KKML 190 Query: 187 EQKGGKVIGEEYLPIDGSDWTTVVSKIRSSKPDAL 221 E KG + E + D +D + ++ ++ S D + Sbjct: 191 EAKGIAIGRTETMTPDMTDLSAQLAALKGSGSDTV 225 >gi|152980080|ref|YP_001353239.1| ABC transporter leu/Ile/val-binding precursor signal peptide protein [Janthinobacterium sp. Marseille] Length = 410 Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 110/245 (44%), Gaps = 14/245 (5%) Query: 134 CNKWMYVNGWVPEQQVAPVVDYFTKSKHAKTFFLVGSDYAFGRGMLEFTKKYIEQKGG-- 191 C+ W + E ++ + + K + K +++G +YA G+ + T+ Y+ +K Sbjct: 141 CSFWHFRFDANSEMKMESLTTFMAKDPNIKKIYVIGQNYALGQEISRSTRAYMGRKRPDV 200 Query: 192 KVIGEEYLPI-DGSDWTTVVSKIRSSKPDALISATAGGAPNVSLAKQLKGAGLTLPYGNL 250 +++G++ PI D++ V+K+++S D +I+A GA L K + A L + L Sbjct: 201 QIVGDDLHPIGQVKDFSPYVAKMKASGADTIITAN-WGADLALLVKAARDADLKANFYTL 259 Query: 251 -AVDEGTAQTMGDAA-DGLYMSASYLTGIDTPENKKFMEALKKKFGADMKTPNELSEPQY 308 A G MG A D + A + +T K+ +E KKK+ D + Y Sbjct: 260 YAATTGVPTAMGAAGLDRVKYVAYWNLNNETYAGKEIIEGFKKKYNDDY-----YAMASY 314 Query: 309 EAFYLFKAAVEKAGSTDNDKVIKALGEVSFNGPRGLVAMNKSRH---TPLSMRLGQVQHD 365 + A ++AGSTD KV A+ + G V M KS H PL + Q++ Sbjct: 315 TVLAMLGKAFKEAGSTDPLKVALAMEGMKVKSLNGEVEMRKSDHQAQQPLYIATWVKQNN 374 Query: 366 GTIKI 370 +K Sbjct: 375 TDVKF 379 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.132 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 886,353 Number of extensions: 36371 Number of successful extensions: 141 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 127 Number of HSP's successfully gapped: 7 Length of query: 387 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 302 Effective length of database: 906,776 Effective search space: 273846352 Effective search space used: 273846352 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)