BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4508.p
         (241 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981446|ref|YP_001352247.1| hypothetical protein mma_0557 [...    77   8e-16

>gi|152981446|ref|YP_001352247.1| hypothetical protein mma_0557
           [Janthinobacterium sp. Marseille]
          Length = 212

 Score = 77.4 bits (189), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 93/199 (46%), Gaps = 18/199 (9%)

Query: 12  LHYIHDPLCGWCYGAAPLVAAARAILP---VQAHGGGMMAGRNRRRVDAQLRDYVMPHDH 68
           L YI DP+C WCYG  P +      LP   ++   GG+ A  N+  +D +L+  ++ H  
Sbjct: 4   LIYIADPMCSWCYGFGPELKTLLGGLPDTQLELIVGGLRA-YNKEVMDEKLKATLLHHWK 62

Query: 69  RIAQMTGQTFGENYFNGLLKDTNAVFDSAPPIAAVLAVTALKGEAAGLDMLAAIQRAHYQ 128
           ++ +++G  F +N     L     ++D+ P   AV+    L  + A LD+  AIQ   Y 
Sbjct: 63  KVEEVSGLPFAKNG----LSHEGFIYDTEPACRAVVTAGMLAPDTA-LDVFHAIQHGFYA 117

Query: 129 QGRRISEPATLTELAQA------LEIDAATFAAELQRVEQEELAQHIEASRELLNYVGGR 182
           +    ++   L ++A +      + IDAA F   L+    EE     EA        G  
Sbjct: 118 ENLDTTKGEVLADIAVSVFEKADINIDAAEF---LKTWASEEARNATEADFTQTKLWGVS 174

Query: 183 GFPTFVLQRGDTLEVIDTG 201
           GFPT VL++   L ++ +G
Sbjct: 175 GFPTLVLEKSGELHLVTSG 193


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 514,875
Number of extensions: 19227
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 160
Effective length of database: 921,564
Effective search space: 147450240
Effective search space used: 147450240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)