BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4506.p (305 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980915|ref|YP_001353545.1| LysR family transcriptional reg... 395 e-111 gi|152980272|ref|YP_001353541.1| LysR family transcriptional reg... 168 4e-43 gi|152982904|ref|YP_001352613.1| LysR family transcriptional reg... 166 1e-42 gi|152979810|ref|YP_001352746.1| LysR family transcriptional reg... 165 3e-42 gi|152981563|ref|YP_001352068.1| LysR family transcriptional reg... 165 4e-42 >gi|152980915|ref|YP_001353545.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 300 Score = 395 bits (1016), Expect = e-111, Method: Compositional matrix adjust. Identities = 195/304 (64%), Positives = 231/304 (75%), Gaps = 10/304 (3%) Query: 1 MDRLMAMQVFVAVVDGGSLSAAAEQLDLSRPVVSRYVAELEDWVGARLLHRTTRRLSLTP 60 MDRL AMQVFV VVD GS SAAA+QLDLSRPVVSRY+AELE+W GARLLHRTTR+LSLT Sbjct: 1 MDRLSAMQVFVTVVDSGSQSAAADQLDLSRPVVSRYLAELEEWAGARLLHRTTRKLSLTA 60 Query: 61 AGNELLPRCRQMLEYSDDMRHALEAPDETPRGLLRITTSTSFAQTQLIQAVVDYGQRYPG 120 AG E+LPRCRQMLE + DM++ + P++ P+GLLRIT STSF Q+ L AV DY + YPG Sbjct: 61 AGAEMLPRCRQMLELATDMKNVVAIPEDAPQGLLRITVSTSFGQSHLAAAVADYVKLYPG 120 Query: 121 VAVDLLALDRTVNLVEERIDLAIRMTNRLEPNLIARQLGVCRSVICATPAYLARHGLPRK 180 V VD+L LDR VNLVEERIDLAIR++ L+PNLIAR+L VCRSV+CA PAYL HG P + Sbjct: 121 VTVDMLVLDRVVNLVEERIDLAIRISKELDPNLIARRLTVCRSVVCAAPAYLHEHGKPTQ 180 Query: 181 VEDLALHNCLTHSYVGRSLWQFDPKRKTTKASQKAKTQTVAVGGSISANEVTVLLQAVLA 240 E L LHNCLTHSY G S+W + + VAV G+ISAN+ + LL A LA Sbjct: 181 AEQLVLHNCLTHSYYG-SVWLLERDKLPVN---------VAVKGNISANDASSLLPAALA 230 Query: 241 GVGIGHMPAYMVAPLVASGQLVRLLPEYEPLQLGMYGVYASRKHMPATLRTMLDFLAQRF 300 G GI +P ++ AP + SGQL+ LLPEY P + G++GVYASRKHMPATLRTMLDFLA RF Sbjct: 231 GAGIAMLPTFLAAPYIRSGQLLPLLPEYHPQEFGLFGVYASRKHMPATLRTMLDFLAARF 290 Query: 301 AGQP 304 +P Sbjct: 291 TDEP 294 >gi|152980272|ref|YP_001353541.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 308 Score = 168 bits (426), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 105/305 (34%), Positives = 162/305 (53%), Gaps = 11/305 (3%) Query: 1 MDRLMAMQVFVAVVDGGSLSAAAEQLDLSRPVVSRYVAELEDWVGARLLHRTTRRLSLTP 60 MD + + F +V GSL+AAA++L ++ P VS+ +A +E + RLL+RTTRR+SLTP Sbjct: 1 MDGISDLAFFSLLVKRGSLAAAAQELGVTPPSVSKRLAGIESRLRVRLLNRTTRRISLTP 60 Query: 61 AGNELLPRCRQMLEYSDDMRHALEAPDETPRGLLRITTSTSFAQTQLIQAVVDYGQRYPG 120 G L +++ + + + + T +GLL+++ + F + + + + + YP Sbjct: 61 EGEIYLADGTRLVAELEALEQRISGGNITAKGLLKVSATFGFGRRHITPQLSAFARLYPE 120 Query: 121 VAVDLLALDRTVNLVEERIDLAIRMTNRLEPNLIARQLGVCRSVICATPAYLARHGLPRK 180 V V L DR VNLVE+ D IR + L AR++ R ++CA+PAYL +HG P Sbjct: 121 VEVQLHLTDRPVNLVEQGFDADIRFGQIPDARLSARKIADNRRLVCASPAYLQKHGTPLV 180 Query: 181 VEDLALHNC--LTHSYVGRSLWQFDPKRKTTKASQKAKTQTVAVGGSISANEVTVLLQAV 238 DL HNC L S W F S K +TV V G++SAN+ Sbjct: 181 PRDLQQHNCILLRESDEIYGSWHF---------SSGIKQETVKVRGALSANDGECATSWA 231 Query: 239 LAGVGIGHMPAYMVAPLVASGQLVRLLPEYEPLQLGMYGVYASRKHMPATLRTMLDFLAQ 298 L G GI + VAP + SG+L +L E++ Q +Y V+ ++ H+ A R ++DF+ Q Sbjct: 232 LDGQGIVVRSEWDVAPYLRSGRLRAVLEEWQLPQADIYIVFPTKNHLSAKTRALVDFMLQ 291 Query: 299 RFAGQ 303 F GQ Sbjct: 292 AFEGQ 296 >gi|152982904|ref|YP_001352613.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 314 Score = 166 bits (421), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 97/303 (32%), Positives = 159/303 (52%), Gaps = 10/303 (3%) Query: 2 DRLMAMQVFVAVVDGGSLSAAAEQLDLSRPVVSRYVAELEDWVGARLLHRTTRRLSLTPA 61 DR +M + V VVD GS S AA +L + VSR + ELE + R+L R+TR+LS+T A Sbjct: 3 DRFESMALLVEVVDAGSFSGAARRLGIPLATVSRKIGELETMLKTRVLQRSTRQLSMTEA 62 Query: 62 GNELLPRCRQMLEYSDDMRHALEAPDETPRGLLRITTSTSFAQTQLIQAVVDYGQRYPGV 121 G + CR++LE D+ A+ P+G L ITT F + ++ V + + YP + Sbjct: 63 GQAYVAACRRILEEVDEAERAVSGEYAAPKGDLVITTPIVFGRKHVMPVVAQFLKAYPDI 122 Query: 122 AVDLLALDRTVNLVEERIDLAIRMTNRLEPNLIARQLGVCRSVICATPAYLARHGLPRKV 181 V ++ D V+L+EE +D+A+R+ + N++A ++G V+CA+PAYL ++G P+K Sbjct: 123 NVRVVLADHVVHLLEEHVDIAVRVGELPDSNMVAARIGTINRVMCASPAYLKKNGTPKKP 182 Query: 182 EDLALHNCLTHS-YVGRSLWQFDPKRKTTKASQKAKTQTVAVGGSISANEVTVLLQAVLA 240 +DL+ H C+T + LWQ + + V V + N ++A + Sbjct: 183 DDLSKHQCITFDGLMAPKLWQL---------CENGREINVPVFSRVVVNTAEAAIEAAES 233 Query: 241 GVGIGHMPAYMVAPLVASGQLVRLLPEYEPLQLGMYGVYASRKHMPATLRTMLDFLAQRF 300 +GI + Y +A V QL +L EYE + V+A + +P +R LD+ R Sbjct: 234 DIGITSVLCYQIAERVRDKQLKMVLREYEREAWPINLVHAGQGILPLKVRAFLDYARPRL 293 Query: 301 AGQ 303 + + Sbjct: 294 SAR 296 >gi|152979810|ref|YP_001352746.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 361 Score = 165 bits (418), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 96/292 (32%), Positives = 157/292 (53%), Gaps = 7/292 (2%) Query: 7 MQVFVAVVDGGSLSAAAEQLDLSRPVVSRYVAELEDWVGARLLHRTTRRLSLTPAGNELL 66 ++ FV + G+LSAAA LD++ P ++ +A+LE +G RL++RTTR +SLT G L Sbjct: 65 LEFFVLIARLGNLSAAARALDITPPAATKRLAQLESRLGVRLVNRTTRSISLTSEGEIYL 124 Query: 67 PRCRQMLEYSDDMRHALEAPDETPRGLLRITTSTSFAQTQLIQAVVDYGQRYPGVAVDLL 126 ++L +M A+ + PRGLLR+ + F +T + V ++ +RYP V V Sbjct: 125 GYAARILAEVKEMEDAVSSGGGAPRGLLRVNATLGFGRTAIAPLVSEFVRRYPQVEVQFE 184 Query: 127 ALDRTVNLVEERIDLAIRMTNRLEPNLIARQLGVCRSVICATPAYLARHGLPRKVEDLAL 186 D+ ++LVE DLAIR + L AR+L R +CA+P YL RHG P+ + DL+ Sbjct: 185 VSDKPIDLVENGFDLAIRFGTLPDTRLNARKLMSNRRFLCASPIYLERHGTPQTLADLSR 244 Query: 187 HNCLTHSYVGRSLWQFDPKRKTTKASQKAKTQTVAVGGSISANEVTVLLQAVLAGVGIGH 246 H C+TH Q D T + ++ + + + V ++S+N+ ++L L GI Sbjct: 245 HRCITHR-------QNDEAAATWRFTRDGRNEVIKVESALSSNDGDIVLGWALDAHGILI 297 Query: 247 MPAYMVAPLVASGQLVRLLPEYEPLQLGMYGVYASRKHMPATLRTMLDFLAQ 298 + +A V SG+L +LP+Y ++ Y +R++ R +DFL + Sbjct: 298 RSEWDLAKYVKSGRLKIVLPDYVLPSADLFVYYPNRRNQSTRARAFIDFLIE 349 >gi|152981563|ref|YP_001352068.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 165 bits (417), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 95/306 (31%), Positives = 162/306 (52%), Gaps = 12/306 (3%) Query: 1 MDRLMAMQVFVAVVDGGSLSAAAEQLDLSRPVVSRYVAELEDWVGARLLHRTTRRLSLTP 60 MD+L ++ FV V+ S +AAA L ++ +V R + LE +G RLLHR+TRRL+LT Sbjct: 1 MDKLKQIEAFVMAVEHNSFAAAALALQVTPVMVGRRIDTLEKRLGVRLLHRSTRRLALTE 60 Query: 61 AGNELLPRCRQMLEYSDDMRHALEAPDETPRGLLRITTSTSFAQTQLIQAVVDYGQRYPG 120 G+ L CR+ML + AL A G L ++ SF + + ++ +++PG Sbjct: 61 EGSVYLEHCRKMLNELEHAESALSAGHNKVTGHLIVSAPASFGRQHVAPYAQEFLEQHPG 120 Query: 121 VAVDLLALDRTVNLVEERIDLAIRMTNRLEPNLIARQLGVCRSVICATPAYLARHGLPRK 180 + + DR V+LV+E D+ IR+ ++PN +A +L + V+C T Y +HG P+ Sbjct: 121 LKMSFNLTDRVVDLVQEGYDMGIRIGGNIDPNFVAIKLAANKRVVCGTREYFKKHGKPKT 180 Query: 181 VEDLALHNCLTHSYVG--RSLWQFDPKRKTTKASQKAKTQTVAVGGSISANEVTVLLQAV 238 ++DLA HNCL+ + G + W F+ + KT +V GS+ N+ +L + + Sbjct: 181 LDDLANHNCLSFNLQGGQQRGWYFN---------YRGKTVSVRAQGSLDCNDGELLHRWM 231 Query: 239 LAGVGIGHMPAYMVAPLVASGQLVRLLPEYEPLQLGMYGVYASRKHMPATLRTMLDFLAQ 298 G+GI + + + SG L +L +Y + + VY ++++PA +R + L Sbjct: 232 TEGLGIAWRSVWEIQRQLESGMLETVLDDYAIPEYDIMAVYPQQRNVPAKVRLFISHLKA 291 Query: 299 RFAGQP 304 ++ QP Sbjct: 292 MYS-QP 296 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 647,252 Number of extensions: 24521 Number of successful extensions: 176 Number of sequences better than 1.0e-08: 32 Number of HSP's gapped: 144 Number of HSP's successfully gapped: 32 Length of query: 305 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 222 Effective length of database: 914,170 Effective search space: 202945740 Effective search space used: 202945740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)