BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4504.p
         (231 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979931|ref|YP_001353171.1| 3-oxoacid CoA-transferase subun...   418   e-118

>gi|152979931|ref|YP_001353171.1| 3-oxoacid CoA-transferase subunit
           A [Janthinobacterium sp. Marseille]
          Length = 232

 Score =  418 bits (1074), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/231 (87%), Positives = 222/231 (96%)

Query: 1   VNKVYPDAATALKDIVKDGQTIAVGGFGLCGIPEALIAALRDAGVQNLTAISNNAGVDGF 60
           +NKVYPDAA+AL DIV+DGQTIAVGGFGLCGIPEALIAALRD+GVQNLTAISNNAGVD  
Sbjct: 1   MNKVYPDAASALADIVRDGQTIAVGGFGLCGIPEALIAALRDSGVQNLTAISNNAGVDDA 60

Query: 61  GLGQLLTTRQIKKMIASYVGENKEFERQYLAGELELEFTPQGTLAEKLRAGGAGIPAFFT 120
           GLGQLL TRQIKKMIASYVGENKEFERQ+LAGELELEFTPQGTLAEKLRAGGAGIPAFFT
Sbjct: 61  GLGQLLQTRQIKKMIASYVGENKEFERQFLAGELELEFTPQGTLAEKLRAGGAGIPAFFT 120

Query: 121 KTGVGTLVAEGKEVREFDGERYVMERSLVADVSLVKAQKADKAGNLVFNKTARNFNPNVA 180
           KTGVGT+VAEGK+VREFDGE+YVMER+LVADVS+VKA  ADKAGNLV+ +TARNFNPNVA
Sbjct: 121 KTGVGTVVAEGKDVREFDGEQYVMERALVADVSIVKAYMADKAGNLVYRRTARNFNPNVA 180

Query: 181 MAGKITVVEVEELVEVGQLDPDQIHTPGIFVHRIVVNATPEKRIEQRTVRA 231
           MAGKITVVEVE+LVE+G++DPD +HTPGIF+HRIV+NA P+KRIEQRT+RA
Sbjct: 181 MAGKITVVEVEKLVEIGEIDPDHVHTPGIFIHRIVLNAHPQKRIEQRTLRA 231


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.136    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 521,224
Number of extensions: 20942
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 151
Effective length of database: 925,261
Effective search space: 139714411
Effective search space used: 139714411
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)