BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4503.p
         (216 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979770|ref|YP_001353172.1| 3-oxoacid CoA-transferase subun...   360   e-101

>gi|152979770|ref|YP_001353172.1| 3-oxoacid CoA-transferase subunit
           B [Janthinobacterium sp. Marseille]
          Length = 217

 Score =  360 bits (925), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/216 (81%), Positives = 197/216 (91%)

Query: 1   MAWTRDEMAARAAKELQDGFYVNLGIGLPTLVANHVPSDIEVWLQSENGLLGIGPFPTED 60
           MAWTR+EMAARAA+ELQDG YVNLGIGLPTLVAN+VP DI VWLQSENGLLGIGPFPTED
Sbjct: 1   MAWTREEMAARAAQELQDGAYVNLGIGLPTLVANYVPDDIHVWLQSENGLLGIGPFPTED 60

Query: 61  QVDPDLINAGKQTVTTIPGSSFFSSADSFGMIRGGKINIAILGAMQVSAKGDLANWMIPG 120
           ++DPDLINAGKQTVT++PGSS+FSSADSFGMIRGGKI+IA+LGAMQVSA+GDLANWMIPG
Sbjct: 61  ELDPDLINAGKQTVTSLPGSSYFSSADSFGMIRGGKIDIALLGAMQVSARGDLANWMIPG 120

Query: 121 KMVKGMGGAMDLVAGVGRVVVLMEHVAKAKDGSTSKKILNDCNLPLTGVGVVNRIITDLG 180
           KMVKGMGGAMDLVAGV R+VVLMEHVA+AKDGS S KIL  C+LPLTGV VV+RIITDLG
Sbjct: 121 KMVKGMGGAMDLVAGVKRIVVLMEHVARAKDGSVSHKILPQCSLPLTGVAVVDRIITDLG 180

Query: 181 VIDVTPGGLKLIELAAGVTKEEVIEKTEAPLDVSEV 216
           V+D+TP GL+L+ELA GVT  E+   T  PLD S++
Sbjct: 181 VMDITPQGLQLVELATGVTLAEIQAGTGVPLDSSKL 216


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 534,372
Number of extensions: 22631
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 137
Effective length of database: 928,958
Effective search space: 127267246
Effective search space used: 127267246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)