BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4502.p (510 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981055|ref|YP_001351702.1| response regulator/GGDEF domain... 136 3e-33 gi|152982609|ref|YP_001351719.1| hypothetical protein mma_0029 [... 122 5e-29 gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [... 116 3e-27 gi|152982756|ref|YP_001352256.1| hypothetical protein mma_0566 [... 114 2e-26 gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [... 110 3e-25 >gi|152981055|ref|YP_001351702.1| response regulator/GGDEF domain-containing protein [Janthinobacterium sp. Marseille] Length = 341 Score = 136 bits (343), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 73/168 (43%), Positives = 104/168 (61%), Gaps = 2/168 (1%) Query: 338 LEELALTDGLTGLLNRRALDEALQAAWERCRRNLHSTFSVLFIDVDFFKSYNDTYGHKLG 397 L+ L TDGLTG+ NRR D+ L A W+R RR S+L IDVD FK YNDTYGH G Sbjct: 170 LQRLTNTDGLTGIANRRYFDDYLSAEWKRARRE-QQELSILLIDVDNFKLYNDTYGHVAG 228 Query: 398 DAVLQEVAQAISENLPRNTDCAGRYGGEEFVVLLELTDLQGACLMAQRLCDAVYSRLIVH 457 D VL++VA+++ + R D + R+GGEEF ++L T GA + +++C AV + I H Sbjct: 229 DLVLKQVAKSLEASAMRPADLSARFGGEEFAIILPATGSNGAVISGKKVCAAVEALRIPH 288 Query: 458 ATSPL-RVVTISVGVATLEREHHRRVEDVLNAADAALYRAKREGRNAV 504 A + + +T+SVG AT+ + + D++ AD LYRAK G++ V Sbjct: 289 AHAAIGEWLTVSVGAATITPQAEQVPNDLIELADKRLYRAKELGKHRV 336 >gi|152982609|ref|YP_001351719.1| hypothetical protein mma_0029 [Janthinobacterium sp. Marseille] Length = 313 Score = 122 bits (306), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 65/178 (36%), Positives = 102/178 (57%), Gaps = 2/178 (1%) Query: 332 VTIEKRLEELALTDGLTGLLNRRALDEALQAAWERCRRNLHSTFSVLFIDVDFFKSYNDT 391 + ++K LE L+ DGLTG+ NRR D L+ W N S++ +D+D+FK YND Sbjct: 137 IDLQKELETLSFKDGLTGVANRRMFDSVLELEWANAM-NSKRPLSIILLDIDYFKQYNDH 195 Query: 392 YGHKLGDAVLQEVAQAISENLPRNTDCAGRYGGEEFVVLLELTDLQGACLMAQRLCDAVY 451 YGH GD L++VA+ ++ R D GR+GGEEF+++L T+ + A +A+R ++ Sbjct: 196 YGHIQGDHCLKQVAKTLNNAAIRQRDFFGRFGGEEFILILPETNEKSALTVAERCRMLIF 255 Query: 452 SRLIVHATSPL-RVVTISVGVATLEREHHRRVEDVLNAADAALYRAKREGRNAVRVSG 508 I H S + +++TIS+GV T+ + + AD LY AK++GRN + V Sbjct: 256 KEQIPHEKSAVSQLLTISLGVHTVIPSYGDEALKFIEEADRRLYLAKQKGRNCIAVDA 313 >gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [Janthinobacterium sp. Marseille] Length = 352 Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/173 (43%), Positives = 108/173 (62%), Gaps = 6/173 (3%) Query: 336 KRLEELALTDGLTGLLNRRALDEALQAAWERCRRNLHSTFSVLFIDVDFFKSYNDTYGHK 395 +RL+ + LTD LTG+ NRR ++ L R +R+ ++ S ++ID+D FK ND +GH+ Sbjct: 178 ERLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGYA-LSGMYIDLDHFKKVNDNFGHQ 236 Query: 396 LGDAVLQEVAQAISENLPRNTDCAGRYGGEEFVVLLELTDLQGACLMAQRLCDAVYSRLI 455 GD VL EVA I L R +D GR+GGEEFVVLL L A ++A+R+ +V R I Sbjct: 237 GGDEVLCEVANRIKAEL-RLSDALGRFGGEEFVVLLIDAPLDAALVVAERIRASVSERPI 295 Query: 456 VHATSPLRVVTISVGVATL---EREHHRRV-EDVLNAADAALYRAKREGRNAV 504 V ++ T+S+GVA+L +R+ V + +L AD ALY+AK+EGRN V Sbjct: 296 VLSSGEELRATVSIGVASLNTADRQDSAAVAQQLLAKADLALYQAKKEGRNKV 348 >gi|152982756|ref|YP_001352256.1| hypothetical protein mma_0566 [Janthinobacterium sp. Marseille] Length = 421 Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/173 (41%), Positives = 97/173 (56%), Gaps = 13/173 (7%) Query: 335 EKRLEE---LALTDGLTGLLNRRALDEALQAAWERCRRNLHSTFSVLFIDVDFFKSYNDT 391 E+ +EE LA D L+ LLNRRA+ A + R H ++ FID+D FK +ND Sbjct: 253 ERTVEENRHLATHDELSKLLNRRAIVSAGEYNLASATRLGHE-LTIAFIDIDMFKHFNDK 311 Query: 392 YGHKLGDAVLQEVAQAISENLPRNTDCAGRYGGEEFVVLLELTDLQGACLMAQRLCDAV- 450 +GH GD V+QEVA AI + R D GRYGGEEF+++L + A ++ +RL DAV Sbjct: 312 FGHAAGDTVIQEVA-AILQQTCRTIDMVGRYGGEEFLIILPGVNRDAAAIVGERLVDAVR 370 Query: 451 -YSRLIVHATSPLRVVTISVGVATLEREHHRRVEDVLNAADAALYRAKREGRN 502 Y + +H VTIS G+ TL + ++ ADAALY AK GRN Sbjct: 371 QYRFMGIHP------VTISAGLTTLPKTEQCTWTQLVRRADAALYEAKGLGRN 417 >gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [Janthinobacterium sp. Marseille] Length = 876 Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/188 (39%), Positives = 102/188 (54%), Gaps = 10/188 (5%) Query: 321 LLHVREELRRRVTIEKRLEELALTDGLTGLLNRRALDEALQAAWERCRRNLHSTFSVLFI 380 +L V ++ +R E ++E A+ D LT L NRR L L A E R S+ ++LF Sbjct: 422 VLGVTRDITKRKQTELQIEYQAMHDMLTDLPNRRFLVNTLNTAMETSRLR-QSSLTMLFC 480 Query: 381 DVDFFKSYNDTYGHKLGDAVLQEVAQAISENLPRNTDCAGRYGGEEFVVLLELTDLQGAC 440 D+DFFKS NDT+GH GD L E+++ I LP D R+GG EFV+L + L A Sbjct: 481 DLDFFKSVNDTHGHDFGDQCLIEISKRIVTALP-TADFVARFGGNEFVILTN-SSLAEAT 538 Query: 441 LMAQRLCDAVYSRLIVHATSPLRVVTI--SVGVATLEREHHRRVEDVLNAADAALYRAKR 498 + A + AV RLI VV I S+G+A L H+ D++ ADAA+Y+AK Sbjct: 539 IKANTIMAAVSERLIFDNV----VVKIQTSIGIAQLN-AGHQSPADLIRDADAAMYQAKE 593 Query: 499 EGRNAVRV 506 GRN + Sbjct: 594 RGRNRTEI 601 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,008,303 Number of extensions: 39665 Number of successful extensions: 218 Number of sequences better than 1.0e-08: 30 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 31 Length of query: 510 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 423 Effective length of database: 899,382 Effective search space: 380438586 Effective search space used: 380438586 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)