BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4501.p (466 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980591|ref|YP_001354672.1| two-component system sensor kin... 88 1e-18 gi|152982333|ref|YP_001354112.1| two-component sensor histidine ... 87 3e-18 gi|152982315|ref|YP_001354919.1| two component sensor histidine ... 80 3e-16 gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcr... 78 1e-15 gi|152982390|ref|YP_001355364.1| signal transduction histidine k... 77 2e-15 >gi|152980591|ref|YP_001354672.1| two-component system sensor kinase [Janthinobacterium sp. Marseille] Length = 566 Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/214 (30%), Positives = 107/214 (50%), Gaps = 22/214 (10%) Query: 237 AQSERLATLGRVAAGMAHEIRNPIGAM----RMKAENALAAPPQVRQTRVTGALEMVVSQ 292 AQ +LA++GR+ A +AHE+RNP+ A+ + E+ L+A Q L +V Sbjct: 338 AQQLKLASMGRLTASIAHEVRNPLSAIGHATSLLKEDELSAGQQ-------RLLSIVSDN 390 Query: 293 TERLDALVASLLALAQPFQVQRQVLDLAAWIDERRQAHAELAEKHQVQ--LQAAIDLPSF 350 RL+ ++ +L L++ + L L D+ +EL+E H+++ + A D+ + Sbjct: 391 VARLNRMIEDILKLSRKAHQYHEPLSLGLLFDDLL---SELSEIHEIKDGMIAVADMKPY 447 Query: 351 TGGLATSALDPVQMARALDNLLLNALAHCS-AGGRIEIGARRQSNGRLLLWVADDGPGVP 409 DP+ + + NLL NAL + S A I + RL L V DDG + Sbjct: 448 K-----VRFDPLHLREIVLNLLTNALRYASGAPASIRVYIVAMPGHRLELHVQDDGAQIS 502 Query: 410 AELRDSLFDPFVSQRSGGTGLGLVLVREIVHAHG 443 + +R LF+PF + + GTGLGL L RE+ +G Sbjct: 503 SAVRAHLFEPFYTTSNKGTGLGLYLARELCLNNG 536 >gi|152982333|ref|YP_001354112.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 587 Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 81/277 (29%), Positives = 124/277 (44%), Gaps = 31/277 (11%) Query: 207 LLAFVIISGV---------WLGATLTRWRGQSERLAAQLAQSERLATLGRVAAGMAHEIR 257 ++AFV+++ V W R ++ R LA RL ++G + A + HEI Sbjct: 313 IIAFVLMTAVILLLIFGFQWQRKKRLRADEEANRQRTALAHVARLGSVGELTASIVHEIN 372 Query: 258 NPIGAMRMKAENALAAPPQVRQTRVTGALEMVVSQTERLDALVASLL-----ALAQPFQV 312 P+GA+ A+ A Q Q+ L +++ R D L ASL+ L + Sbjct: 373 QPLGAILANADAATMMLNQ--QSHPDHELRAILADI-RDDNLRASLIIQKLRVLLSKRSL 429 Query: 313 QRQVLDLAAWIDERRQAHAELAEKHQVQL--QAAIDLPSFTGGLATSALDPVQMARALDN 370 + + + L ID R LA KH V + + A DLP G D + + L N Sbjct: 430 ESKPVSLNEVIDTSRSLLGNLAIKHHVMMAIELAPDLPMIMG-------DSTHLQQVLIN 482 Query: 371 LLLNAL----AHCSAGGRIEIGARRQSNGRLLLWVADDGPGVPAELRDSLFDPFVSQRSG 426 L NA+ A A + I + + + L VAD GPG+P + ++F+ F + + Sbjct: 483 LASNAMEAMEAVPPAQRTLSIKTEQCNASHIRLIVADKGPGIPTNILPNIFESFYTTKPE 542 Query: 427 GTGLGLVLVREIVHAHGGEI-TLASAARGARFEMELP 462 G G+GL +V+ IV AH G I T A GA F + P Sbjct: 543 GMGMGLAIVQTIVDAHCGLIETFNDPAGGAAFVITFP 579 >gi|152982315|ref|YP_001354919.1| two component sensor histidine kinase protein [Janthinobacterium sp. Marseille] Length = 427 Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 111/225 (49%), Gaps = 38/225 (16%) Query: 250 AGMAHEIRNPIGAMRMKAE-NALAAPPQVRQ--TRVTGALEMVVSQT---ERLDALVASL 303 A +HE+R+P+ +RM E A A P++R R G L+ ++ + RLDA A Sbjct: 228 ANASHELRSPLARIRMAVELMAADAQPEMRNELKRNIGELDQLIDEILLASRLDA-TADA 286 Query: 304 LALAQPFQVQRQVLDLAAWIDERRQAHAELAEKHQVQLQAAIDLPSFTGGLATSALDPVQ 363 + +P + V + A ID Q++ Q+ +++P D Sbjct: 287 TQVFEPIDLTALVAEECARID------------AQLETQS-VEIPG----------DARL 323 Query: 364 MARALDNLLLNALAHCSAGGRIEIGARRQSNGRLLLWVADDGPGVPAELRDSLFDPFV-- 421 + R + NLL NA + + G I++ + N +++L V D GPGVP R+++F PF Sbjct: 324 LRRMVRNLLENARRYGN-GTAIDVSLEKTGN-KVVLQVCDGGPGVPVAERENIFAPFYRL 381 Query: 422 ---SQRSGGTGLGLVLVREIVHAHGGEITLAS-AARGARFEMELP 462 S+R GG GLGL LV++I AHGGE+ G+ F++ LP Sbjct: 382 PGASEREGGVGLGLSLVQQIARAHGGEVVCTGREGGGSCFKVTLP 426 >gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcription regulator protein [Janthinobacterium sp. Marseille] Length = 544 Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 100/223 (44%), Gaps = 25/223 (11%) Query: 239 SERLATLGRVAAGMAHEIRNPIGAMRMKAENALAAPPQVRQTRVTGALEMVVSQTERLDA 298 S+ + R A AH+++ P+ MRM++E AL Q Q + +LE + ++ Sbjct: 301 SQSIKVQKRFIADAAHQMKTPLAGMRMQSELALR---QTDQVEIHKSLEQLAKSSKSATR 357 Query: 299 LVASLLALAQ-----PFQVQRQVLDLAAWIDERRQAHAELAEKHQVQLQAAIDL----PS 349 ++ LLALA+ P Q L+L+ A + E Q IDL P Sbjct: 358 MINQLLALARAENQTPTTRPLQPLELSEL------ARDTVQEWVQTSFNKKIDLGFEQPD 411 Query: 350 FTGGLATSALDPVQMARALDNLLLNALAHCSAGGRIEIGARRQSNGRL-LLWVADDGPGV 408 + + A + + L+NL+ NAL + AGG + R RL L V D GPG+ Sbjct: 412 YHIMVNGDA---IMLRELLNNLIDNALNYTPAGGHATVRVRADEEARLAYLEVEDTGPGI 468 Query: 409 PAELRDSLFDPF---VSQRSGGTGLGLVLVREIVHAHGGEITL 448 +F+ F + G+GLGL +VREI HG EI + Sbjct: 469 APHEHKRIFERFYRILGSNVEGSGLGLAIVREIAQQHGAEIDI 511 >gi|152982390|ref|YP_001355364.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 671 Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 118/238 (49%), Gaps = 21/238 (8%) Query: 235 QLAQSERLATLGRVAAGMAHEIRNPIGAMR-----MKAENALAAPPQVRQTRVTGALEMV 289 QL +E+LA +G + AG+AHEI NP+ ++ ++ AA P V G L+++ Sbjct: 442 QLVLAEKLAAIGEITAGVAHEINNPVAVLQGNLDVLRDTLGAAAKP------VQGELQLM 495 Query: 290 VSQTERLDALVASLLALAQPFQVQRQVLDLAAWIDERRQAHAELAEKHQVQLQAAIDLPS 349 Q R++ +V LL A P + V + IDE A + + +H + Q+ I + Sbjct: 496 DQQIYRINTIVTKLLQFASPGEFAGYVETVV--IDE-IVADSLVLVRHLLN-QSRIAVVH 551 Query: 350 FTGGLATSALDPVQMARALDNLLLNALAHCSAGGRIEIGAR--RQSNGR--LLLWVADDG 405 +++ ++ + L NL NA+ GG + I ++++G+ + + VAD G Sbjct: 552 KKEATLPVSINRGELQQVLINLFTNAIHAMKDGGSLTISTSDWQEADGKRGVAISVADTG 611 Query: 406 PGVPAELRDSLFDP-FVSQRSGGTGLGLVLVREIVHAHGGEITLAS-AARGARFEMEL 461 G+ E +FD F ++R GGTGLGL + +V +GG IT+ S G F + L Sbjct: 612 SGIRKEDIAHIFDAFFTTKRQGGTGLGLSISYTLVARYGGTITVRSEEGAGTEFTVRL 669 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.132 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 936,817 Number of extensions: 35421 Number of successful extensions: 203 Number of sequences better than 1.0e-08: 27 Number of HSP's gapped: 178 Number of HSP's successfully gapped: 27 Length of query: 466 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 379 Effective length of database: 899,382 Effective search space: 340865778 Effective search space used: 340865778 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)