BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4500.p (447 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979868|ref|YP_001354671.1| two-components system response ... 310 1e-85 gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(... 291 5e-80 gi|152981133|ref|YP_001355363.1| sigma-54 dependent response reg... 288 6e-79 gi|152982294|ref|YP_001354298.1| transcriptional regulator [Jant... 241 9e-65 gi|152982343|ref|YP_001355176.1| propionate catabolism operon re... 231 9e-62 >gi|152979868|ref|YP_001354671.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 471 Score = 310 bits (794), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 191/464 (41%), Positives = 265/464 (57%), Gaps = 29/464 (6%) Query: 3 RILIVDDDLAFRGSLAETVGDLGHEVLEAGSTAAGLKLLAAHGVDAAIVDLRMADEDGLV 62 RILIVDD+ R L T+ +G ++ A + A L H + D+R+ D G+ Sbjct: 5 RILIVDDEADLRELLEITLVKMGLDIDSAQNLAVARDYLQQHEYALVLTDMRLPDGLGIE 64 Query: 63 FLQRAPA-IAPIPCIMLTAYASGDNTIEAIRLGAFDHLTKPVPRAALVETLERALRQSAA 121 +Q A P ++TA+ S DN + A++ GAFD+L+KPV L + ALR S A Sbjct: 65 LVQEITAQYKNTPVAVITAFGSADNAVVALKAGAFDYLSKPVGLEQLRVMVRSALRISQA 124 Query: 122 LSAPPASQETPPGSERNELVGDSEAMRQVFKQIGRAATSDATVLILGETGTGKELVARAL 181 P A P L+G SEAM + QI R A S A V I GE+G+GKEL AR + Sbjct: 125 DEQPSAKVAVSPALR---LMGQSEAMLALRAQIARLARSMAPVAISGESGSGKELAARDI 181 Query: 182 HRNGSRAKRPFVAVNCAAIPAELIESELFGHVKGAFSGASANRIGRFQEADGGTLFLDEI 241 H +R+ +PFVAVNC AIP L+E+E FG+ KGAF+GA +R G FQ A+GGTL LDE+ Sbjct: 182 HAQSARSDKPFVAVNCGAIPEALMEAEFFGYRKGAFTGAVDDRDGFFQAANGGTLLLDEV 241 Query: 242 GDMAAPTQAKILRVLQERELTPVGGNQSVKVDVRVIAATHRDLPQEIREGRFREDLWYRL 301 D+ Q K+LR +QER + VG VDVR+I+ATH++L + G FR+DL+YRL Sbjct: 242 ADLPLAMQVKLLRAIQERRVRKVGATTEEPVDVRIISATHQNLHDCVGRGTFRQDLYYRL 301 Query: 302 QVLPIKVPPLRERPGDILAIAEHFL-RQHGGDSPKRISPAAARRLLQHSWPGNVRELRNT 360 V+ + +PPLRER DI +A+ L R G + R++PAA LLQ+S+PGNVREL N Sbjct: 302 NVIELNLPPLRERLDDIALLAKAILTRLDAGQA--RLTPAALEALLQYSFPGNVRELENI 359 Query: 361 MERAAVMSHGACIE-------------------VEHIELPELAPASPES---AVAIDWEG 398 +ERA ++ IE VE + +PE A +P++ A D G Sbjct: 360 LERALAFANDGVIEVSDLVLKAAHTPKAVAAEMVEALAVPEQAMVAPDAKPLAATSDLPG 419 Query: 399 SLAQAVAQVERVMLQRALAAANGNRAEAARRLGISRQQLYRKLE 442 SL + VER +++RAL+ NR +AA LGIS +QL +++ Sbjct: 420 SLPDHLDDVEREIIRRALSKTQFNRTQAAELLGISFRQLRYRMQ 463 >gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(I) [Janthinobacterium sp. Marseille] Length = 506 Score = 291 bits (746), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 168/383 (43%), Positives = 233/383 (60%), Gaps = 11/383 (2%) Query: 1 MARILIVDDDLAFRGSLAETVGDLGHEVLEAGSTAAGLKLLAAHGVDAAIVDLRMADEDG 60 M I IVDDD + R L + + + L+ L + D+RM E G Sbjct: 1 MKPIWIVDDDESIRWVLEKALARENLATKSFSNARDALEALKTGAPQVLVSDIRMPGESG 60 Query: 61 LVFLQRAPAIAP-IPCIMLTAYASGDNTIEAIRLGAFDHLTKPVPRAALVETLERALRQS 119 L LQ A P +P I++TA++ D+ + A + GAF++L KP V + RAL +S Sbjct: 61 LELLQAVKAKHPGLPVIIITAFSDLDSAVAAFQGGAFEYLAKPFDIDHAVGLIRRALEES 120 Query: 120 A-ALSAPPASQETPPGSERNELVGDSEAMRQVFKQIGRAATSDATVLILGETGTGKELVA 178 S S ETP E++G + AM+ VF+ IGR + S+ TVLI GE+G+GKELVA Sbjct: 121 LRETSVEQVSAETP------EILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVA 174 Query: 179 RALHRNGSRAKRPFVAVNCAAIPAELIESELFGHVKGAFSGASANRIGRFQEADGGTLFL 238 RALH++ RA +PF+A+N AAIP +L+ESELFGH +GAF+GA A R GRF++A+ GTLFL Sbjct: 175 RALHKHSPRASQPFIALNTAAIPKDLLESELFGHERGAFTGAQATRRGRFEQAENGTLFL 234 Query: 239 DEIGDMAAPTQAKILRVLQERELTPVGGNQSVKVDVRVIAATHRDLPQEIREGRFREDLW 298 DEIGDM Q ++LRVL + VGG+Q +K +VRVIAATH++L +REG FREDL+ Sbjct: 235 DEIGDMPFDLQTRLLRVLSDGHFYRVGGHQPLKANVRVIAATHQNLEHRVREGLFREDLY 294 Query: 299 YRLQVLPIKVPPLRERPGDILAIAEHFLRQHG---GDSPKRISPAAARRLLQHSWPGNVR 355 +RL V+ +++P LRER DI + HFL+Q G KR+S +A + L PGNVR Sbjct: 295 HRLNVIRLRLPSLRERREDIPILTRHFLQQSAKQLGVEVKRMSDSAMQFLSSLELPGNVR 354 Query: 356 ELRNTMERAAVMSHGACIEVEHI 378 +L N VM+ G +E + + Sbjct: 355 QLENLCNWITVMAPGQTVEAKDL 377 >gi|152981133|ref|YP_001355363.1| sigma-54 dependent response regulator [Janthinobacterium sp. Marseille] Length = 481 Score = 288 bits (736), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 179/453 (39%), Positives = 259/453 (57%), Gaps = 26/453 (5%) Query: 4 ILIVDDDLAFRGSLAETVGDLGHEVLEAGSTAAGLKLLAAHGVDAAIVDLRMADEDGLVF 63 ILIVDD+ R L T+ V S A LL D I+D + + G+ + Sbjct: 45 ILIVDDEPGMRSFLQRTLVGRCSRVEAVDSVEAANVLLGQQHFDLIILDNSLPGKSGVDW 104 Query: 64 LQRAPAIA-PIPCIMLTAYASGDNTIEAIRLGAFDHLTKPVPRAALVETLERAL------ 116 LQ + +++TA+A + I A+R GA D L KP ++ + R Sbjct: 105 LQEIRELGLHNDVVLITAFADLETAIRALRAGAADFLLKPFRVNQILSAIGRCFDRAHLR 164 Query: 117 RQSAALSAPPASQETPPGSERNELVGDSEAMRQVFKQIGRAATSDATVLILGETGTGKEL 176 R++ L S G E LVG S A+ + + I R AT +TVLI GE+GTGKE+ Sbjct: 165 RENFILRRELDSHIDLAGVE--GLVGASAALEPIREAIKRLATVPSTVLITGESGTGKEI 222 Query: 177 VARALHRNGSRAKRPFVAVNCAAIPAELIESELFGHVKGAFSGASANRIGRFQEADGGTL 236 ARA+H+ +R+ FV +NC A+ ++IESELFGH+KGAFSGA+++R G F A GGTL Sbjct: 223 AARAMHKLSNRSHNHFVPINCGAVAPDIIESELFGHIKGAFSGAASSREGLFFYAQGGTL 282 Query: 237 FLDEIGDMAAPTQAKILRVLQERELTPVGGNQSVKVDVRVIAATHRDLPQEIREGRFRED 296 FLDE+ ++ Q K+LRVL+E+ + PVG + + VDVRVIAAT+R++ + ++EGRFR+D Sbjct: 283 FLDEVAELPLAMQVKLLRVLEEKRIRPVGAEREIPVDVRVIAATNRNVEEAVQEGRFRQD 342 Query: 297 LWYRLQVLPIKVPPLRERPGDILAIAEHFLRQHG---GDSPKRISPAAARRLLQHSWPGN 353 L+YRL V+ + +PPLRER DI A+AE+F+RQ G K+ A L +SWPGN Sbjct: 343 LYYRLNVVQLHMPPLRERTEDIPALAEYFVRQLAQQLGVPAKKPDSALFASLAGYSWPGN 402 Query: 354 VRELRNTMERAAVMSHGACIEVEHIELPELAPASPESAVAIDWEGSLAQAVAQVERVMLQ 413 VRELRN +ER ++ + + ++ A+ + + + +L VE+ + Sbjct: 403 VRELRNLIERWLILGN----------ISDVTAANNTGSTTTNGDVTL----EAVEKQHIL 448 Query: 414 RALAAANGNRAEAARRLGISRQQLYRKLEEQGM 446 + LA GN+ EA RRLGISR+ L RK E G+ Sbjct: 449 KILAEVGGNKTEAGRRLGISRKTLERKCAEWGV 481 >gi|152982294|ref|YP_001354298.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 371 Score = 241 bits (614), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 132/312 (42%), Positives = 191/312 (61%), Gaps = 15/312 (4%) Query: 139 ELVGDSEAMRQVFKQIGRAATSDATVLILGETGTGKELVARALHRNGSRAKRPFVAVNCA 198 +L G S M+Q+F+ IG+ A + A VLI GE+GTGKELVA+A+H+ +PFVA+NC+ Sbjct: 44 DLYGASAPMQQLFQMIGKVAPTTANVLIAGESGTGKELVAQAIHQLSREQDKPFVALNCS 103 Query: 199 AIPAELIESELFGHVKGAFSGASANRIGRFQEADGGTLFLDEIGDMAAPTQAKILRVLQE 258 A+ +LIE+ELFGH +G+F+GA + G F+ ADGGTLFLDE+ +M+ Q K+LRVL+ Sbjct: 104 AVSPQLIEAELFGHERGSFTGAIRMQKGCFERADGGTLFLDEVTEMSLDMQVKLLRVLET 163 Query: 259 RELTPVGGNQSVKVDVRVIAATHRDLPQEIREGRFREDLWYRLQVLPIKVPPLRERPGDI 318 +G + +V VRV+AAT+RD + ++ G R DL+YRL V P+ +PPLRER DI Sbjct: 164 SRFCRIGAEEETEVKVRVVAATNRDPVEAMKSGILRSDLFYRLAVFPLDLPPLRERGEDI 223 Query: 319 LAIAEHFLRQ-HGGDSPKRISPAAARRLL-QHSWPGNVRELRNTMERAAVMSHGACIEVE 376 +A FL Q + D R+ A+ RLL +++WPGNVREL+N + RA +M+ Sbjct: 224 RLLAGLFLDQLNEEDGRNRVFSKASWRLLNEYNWPGNVRELKNVVHRAYIMADQ------ 277 Query: 377 HIELPELAPASPESAVAIDWEGS-----LAQAVAQVERVMLQRALAAANGNRAEAARRLG 431 EL L +P ++ D G L +A E+ ++ L GN+ A LG Sbjct: 278 --ELELLPAVNPNRSMVSDQIGDCVTVQLGSKLADAEQRLIYATLGHCGGNKTLTAEVLG 335 Query: 432 ISRQQLYRKLEE 443 +S + LY +L E Sbjct: 336 VSLKTLYNRLNE 347 >gi|152982343|ref|YP_001355176.1| propionate catabolism operon regulatory protein [Janthinobacterium sp. Marseille] Length = 543 Score = 231 bits (588), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 151/328 (46%), Positives = 197/328 (60%), Gaps = 29/328 (8%) Query: 138 NELVGDSEAMRQVFKQIGRAATSDATVLILGETGTGKELVARALHR------NGSRAKRP 191 +L G+S AM V + I A S ATVLI GETGTGKELVA+A+HR ++A P Sbjct: 222 KDLRGESAAMESVRQSITLFAKSAATVLIQGETGTGKELVAQAMHRAHPLMQGKTQAGHP 281 Query: 192 FVAVNCAAIPAELIESELFGHVKGAFSGAS-ANRIGRFQEADGGTLFLDEIGDMAAPTQA 250 FVAVNC A+ L+ESELFG+ +GAF+G+ R G F+ A GTLFLDEIG+M Q Sbjct: 282 FVAVNCGALAESLLESELFGYEEGAFTGSRRGGRAGLFEAAHRGTLFLDEIGEMPLSLQT 341 Query: 251 KILRVLQERELTPVGGNQSVKVDVRVIAATHRDLPQEIREGRFREDLWYRLQVLPIKVPP 310 ++LRVL+ERE+ VGG + + V VR+I+ATH DL +REGRFR DL+YRL VL + +PP Sbjct: 342 RLLRVLEEREVVRVGGTRPIPVSVRIISATHCDLDARVREGRFRADLFYRLSVLRLSLPP 401 Query: 311 LRERPGDILAIAEHFLRQHGGDSPKRISPA--------AARRLLQHSWPGNVRELRNTME 362 LRER D+ A+AE +L+ R PA LL + WPGNVRELRN ME Sbjct: 402 LRERQEDVAALAEWYLKNALASLDVR-PPANLQAELLTCLPLLLAYRWPGNVRELRNLME 460 Query: 363 RAAVMSHGACIEVEHIELPELAPASPESAVAIDWEGSLAQAVA-----QVERVMLQRALA 417 R A+ A ++ PA +S +A + G +A+ A VE LQ+ L Sbjct: 461 RLALFLAAAPLQAL-------TPAFLKS-IAPELSGVIARDAAVSHEPPVEAETLQQVLL 512 Query: 418 AANGNRAEAARRLGISRQQLYRKLEEQG 445 +GNR AA LGISR L+R+L+ + Sbjct: 513 RHHGNREAAANYLGISRTTLWRRLQAEN 540 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.134 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 973,132 Number of extensions: 40728 Number of successful extensions: 240 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 234 Number of HSP's successfully gapped: 13 Length of query: 447 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 361 Effective length of database: 903,079 Effective search space: 326011519 Effective search space used: 326011519 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)