BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4497.p (269 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981015|ref|YP_001352800.1| Short-chain dehydrogenase [Jant... 252 2e-68 gi|152981275|ref|YP_001354152.1| short-chain alcohol dehydrogena... 91 8e-20 gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 83 2e-17 gi|152982805|ref|YP_001352936.1| short chain dehydrogenase [Jant... 76 2e-15 gi|152982575|ref|YP_001354778.1| short-chain dehydrogenase/reduc... 76 2e-15 >gi|152981015|ref|YP_001352800.1| Short-chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 266 Score = 252 bits (643), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 139/266 (52%), Positives = 181/266 (68%), Gaps = 3/266 (1%) Query: 1 MNQTT-TTQRGTALITGASSGIGAVYADRLARQGYDLILVARNRERLNALAERISNDTRR 59 MNQ T TQ TALITGAS+GIGAVYADRLAR+G++L+LVARN R+ ALA + +T Sbjct: 1 MNQQTRNTQVTTALITGASTGIGAVYADRLARRGHNLVLVARNGARMEALAASLRQETGV 60 Query: 60 TVEVLSADLGNAQSLAQVEDKLRRDASITLLVNNAGIGTHTPLLQSDVEHMTDMIALNVT 119 +EV+ ADL A LA+VE +LR + +L+NNAG SDVE ++I LNVT Sbjct: 61 EIEVIVADLTKAADLAKVEARLRDQRDVGILINNAGAAAPGGFETSDVEAQENLIKLNVT 120 Query: 120 APTRLTYAAVPGFVARGRGAIINISSIVGVAPEILNGVYGGSKAFVLAFSQSLHHELADQ 179 A TRL A VP F+A+G+GAI+NI+S+V +APE GVYG +KA+VLA+SQ+L EL + Sbjct: 121 ALTRLGAAVVPRFLAQGQGAIVNIASVVALAPEFPLGVYGATKAYVLAYSQALQVELGAR 180 Query: 180 GVQVQAVLPGATATDFWAIGGLPLEHLDPAIVMPAEQMVDAALVGFERGELVTIPSLHDE 239 G+ VQAVLP AT T+ W G +E + VM +++VDAALVGF+RGEL+TIP L D Sbjct: 181 GLYVQAVLPAATRTEIWERSGRDVEEIQG--VMEVDELVDAALVGFDRGELITIPPLPDA 238 Query: 240 DAWIRFDSARQSLSTQLSANVPATRY 265 W F+SARQ++ + A RY Sbjct: 239 AQWETFNSARQAMLPNFAQTHAAARY 264 >gi|152981275|ref|YP_001354152.1| short-chain alcohol dehydrogenase [Janthinobacterium sp. Marseille] Length = 248 Score = 90.9 bits (224), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 97/186 (52%), Gaps = 7/186 (3%) Query: 13 LITGASSGIGAVYADRLARQGYDLILVARNRERLNALAERISNDTRRTVEVLSADLGNAQ 72 L+TGA+SG GA A + A+ G+ +I R ++RL+ALA I +V ++ D+ + + Sbjct: 4 LVTGATSGFGAEMARKFAQHGHKVIATGRRQDRLDALAAEIG----PSVLTVAMDVTDKE 59 Query: 73 SLAQVEDKLRRD-ASITLLVNNAGIGTHT-PLLQSDVEHMTDMIALNVTAPTRLTYAAVP 130 S+A L + I +L+NNAG+ P + +E MI N +T +P Sbjct: 60 SIAAALAGLPPEWKEIDVLINNAGLALGVAPAQSASLEQWETMIETNCKGLVTVTRLLLP 119 Query: 131 GFVARGRGAIINISSIVGVAPEILNGVYGGSKAFVLAFSQSLHHELADQGVQVQAVLPG- 189 + R RG IINISS G VYG +KAFV F+++L +L GV+ + PG Sbjct: 120 EMLKRNRGTIINISSSAGAYAYPGANVYGATKAFVDQFTRNLRADLVGTGVRASNIAPGL 179 Query: 190 ATATDF 195 A T+F Sbjct: 180 AGGTEF 185 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 97/185 (52%), Gaps = 5/185 (2%) Query: 12 ALITGASSGIGAVYADRLARQGYDLILVARNRERLNALAERISNDTRRTVEVLSADLGNA 71 AL+TGAS GIG A LA+ G +I A + A++E + N + V D+ +A Sbjct: 11 ALVTGASRGIGRAIAQELAKLGAKVIGTATSESGAAAISEYLGNGGKGVV----LDVNDA 66 Query: 72 -QSLAQVEDKLRRDASITLLVNNAGIGTHTPLLQSDVEHMTDMIALNVTAPTRLTYAAVP 130 +S+A +++ + ++++LVNNAGI ++ E +IA N+TA RL+ A + Sbjct: 67 ARSVALIDEIQKEFGAVSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAVGRLSRAVLR 126 Query: 131 GFVARGRGAIINISSIVGVAPEILNGVYGGSKAFVLAFSQSLHHELADQGVQVQAVLPGA 190 G + G IINI+S+VG + Y +KA V S++L E+ + + V + PG Sbjct: 127 GMMKAKTGRIINITSVVGSSGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNCIAPGF 186 Query: 191 TATDF 195 TD Sbjct: 187 IDTDM 191 >gi|152982805|ref|YP_001352936.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 282 Score = 76.3 bits (186), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 95/194 (48%), Gaps = 10/194 (5%) Query: 7 TQRGTALITGASSGIGAVYADRLARQGYDLILVARNRERLNALAERISND--TRRTVEVL 64 T + LITG SSG G +A+ R+G+ +I RN A+R D R + V+ Sbjct: 4 TTKMNLLITGVSSGFGRAFAETALREGHTVIGTVRNDA-----AKRDFEDLAIGRAIGVV 58 Query: 65 SADLGNAQSL-AQVEDKLRRDASITLLVNNAGIGTHTPLLQSDVEHMTDMIALNVTAPTR 123 D+ + ++ A V + + +LVNNAG G L +S +E M +NV Sbjct: 59 -LDVTDFSAIDAAVASASSKVGPVDVLVNNAGYGHEGILEESPLEEMRHQFDVNVFGAVA 117 Query: 124 LTYAAVPGFVARGRGAIINISSIVGVAPEILNGVYGGSKAFVLAFSQSLHHELADQGVQV 183 + A +P AR G IINI+S+ G Y GSK + S++L E+A G++V Sbjct: 118 MIKAVLPSMRARRTGHIINITSMGGFITMPGIAYYCGSKFALEGISETLAKEVAGFGIKV 177 Query: 184 QAVLPGATATDFWA 197 AV PG+ TD WA Sbjct: 178 TAVAPGSFRTD-WA 190 >gi|152982575|ref|YP_001354778.1| short-chain dehydrogenase/reductase SDR [Janthinobacterium sp. Marseille] Length = 248 Score = 75.9 bits (185), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 89/180 (49%), Gaps = 12/180 (6%) Query: 11 TALITGASSGIGAVYADRLARQGYDLILVARNRERLNALAERISNDTRRTVEVLSADLGN 70 T LITG SSG G A + +I R R + L + + +L D+ + Sbjct: 3 TVLITGCSSGFGLEIAKYFLEHNWKVIATMRT-PRADVLPQS------EHLRILPLDVTD 55 Query: 71 AQSLAQ-VEDKLRRDASITLLVNNAGIGTHTPLLQSDVEHMTDMIALNVTAPTRLTYAAV 129 A S+ + VE+ DA LVNNAG+G P + ++ + ++ N +T A + Sbjct: 56 ASSIRRAVEEAGPIDA----LVNNAGVGMLGPFESTTMDAVREVFETNTFGTMAMTQALL 111 Query: 130 PGFVARGRGAIINISSIVGVAPEILNGVYGGSKAFVLAFSQSLHHELADQGVQVQAVLPG 189 P F AR G I+N++S V + L VY SKA ++AF+ SL EL + ++V VLPG Sbjct: 112 PQFRARKSGVIVNVASSVTLKALPLLPVYTASKAAIVAFTASLALELQEFNIRVGTVLPG 171 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.132 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 620,670 Number of extensions: 26169 Number of successful extensions: 159 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 136 Number of HSP's successfully gapped: 21 Length of query: 269 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 187 Effective length of database: 917,867 Effective search space: 171641129 Effective search space used: 171641129 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)