BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4494.p
         (115 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981647|ref|YP_001354566.1| hypothetical protein mma_2876 [...   101   1e-23

>gi|152981647|ref|YP_001354566.1| hypothetical protein mma_2876
           [Janthinobacterium sp. Marseille]
          Length = 115

 Score =  101 bits (251), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 71/102 (69%), Gaps = 1/102 (0%)

Query: 11  LVISNVFMTFAWYGHLK-FENRPLYLVILVSWMIALAEYCFAVPANRIGHTVYNAAELKT 69
           L +SN+FMT AWYGHLK   ++P ++  L+SW IAL EY   VPANRIG+T ++ A+LK 
Sbjct: 13  LTLSNIFMTVAWYGHLKGLASKPWWIAALISWGIALFEYLLQVPANRIGYTQFSLAQLKI 72

Query: 70  MQEVITLVVFSIFSVLYLGEQFTINHLIGFGCICLGAFFIFK 111
           MQE ITL VF  F+++++ + F ++++    C+    +FIF+
Sbjct: 73  MQEAITLTVFVPFAIVFMDQPFKLDYVWAALCLVGAVYFIFR 114


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.334    0.147    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 251,767
Number of extensions: 8301
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 1
Length of query: 115
Length of database: 1,221,021
Length adjustment: 72
Effective length of query: 43
Effective length of database: 954,837
Effective search space: 41057991
Effective search space used: 41057991
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 123 (52.0 bits)