BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4490.p
         (274 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981220|ref|YP_001352442.1| hypothetical protein mma_0752 [...    95   5e-21

>gi|152981220|ref|YP_001352442.1| hypothetical protein mma_0752
           [Janthinobacterium sp. Marseille]
          Length = 307

 Score = 95.1 bits (235), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 100/215 (46%), Gaps = 7/215 (3%)

Query: 47  LEMAARTVERLNASGAEVVIIARVGQDLSTYRQRYSHLAFAYRD-DQQWYVVHKLNDCGT 105
           L  AA   E L  +  + V+I+R G DLS +  RYSH A A+RD D+ W        C  
Sbjct: 50  LRFAAVVREELALADTDTVLISRSGLDLSRFNIRYSHAAIAWRDEDKVWTARQLYYACEE 109

Query: 106 ALSNIYEQGMGQFFM--DRPFL-LEAYVSVPPPEMQAKLRLAIRGAQVTHLHEPHYNMLA 162
               IY+QGM  F M  D P L   + V VP    Q     A+   +V  L    Y+  A
Sbjct: 110 ERPRIYDQGMAGFAMGIDNPALGYISIVKVPAEAAQMLKEAALDKQRVLRLLAATYSANA 169

Query: 163 YPWATRYQQSNQWVNETLAHA---LEPQIESREQAQAWLRLKGYLPDTLHLGPLTRLGGR 219
           Y +   YQ  NQWV ET+A     L+   + RE+AQ WL+   Y P+   +     +   
Sbjct: 170 YAYGLNYQNCNQWVMETMAAGWGHLDDGADLRERAQLWLQQAHYAPEPTPVNSHWLMFAS 229

Query: 220 MFKANIAFDDHPTALRFSDRIQTTTADSVLAFLQQ 254
            F   +  DDHP   R++ +++ +   +V  F+ +
Sbjct: 230 SFVPLLHLDDHPAEDRYALKLKISLPSTVETFVHE 264


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 586,295
Number of extensions: 22621
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 192
Effective length of database: 917,867
Effective search space: 176230464
Effective search space used: 176230464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)