BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4489.p
         (123 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981738|ref|YP_001352436.1| cytochrome c2 [Janthinobacteriu...   150   3e-38

>gi|152981738|ref|YP_001352436.1| cytochrome c2 [Janthinobacterium
           sp. Marseille]
          Length = 122

 Score =  150 bits (378), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 65/103 (63%), Positives = 84/103 (81%)

Query: 19  HAAGDPVSGRAAFAKCASCHAVGPSARGGFGPQLTNVIGRKAGSTTDFKYSPAMASAGFV 78
           HAAGD  +G+  FAKCA+CH VGPSARG FGPQL  ++GR AG+T D+KYS AM+S+  V
Sbjct: 19  HAAGDVAAGKRVFAKCANCHQVGPSARGNFGPQLNGIVGRTAGTTKDYKYSAAMSSSRVV 78

Query: 79  WTEDKLRAFLKAPSDVVPGNKMRFWGIGSDQQIDDILAYLRTF 121
           WTE  LRAF+++ +DV+PGNKMRF+GI  ++QI D+LAYL+TF
Sbjct: 79  WTEANLRAFIQSTNDVIPGNKMRFFGISDEKQITDLLAYLQTF 121


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 292,123
Number of extensions: 11468
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 1,221,021
Length adjustment: 73
Effective length of query: 50
Effective length of database: 951,140
Effective search space: 47557000
Effective search space used: 47557000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 124 (52.4 bits)