BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4484.p (404 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981819|ref|YP_001351711.1| membrane fusion protein [Janthi... 368 e-103 gi|152981697|ref|YP_001353374.1| HlyD family secretion protein [... 95 6e-21 gi|152981741|ref|YP_001354626.1| acriflavin resistance lipoprote... 92 7e-20 gi|152981890|ref|YP_001351977.1| cation efflux system protein [J... 87 1e-18 gi|152982933|ref|YP_001353408.1| cation efflux system transmembr... 80 2e-16 >gi|152981819|ref|YP_001351711.1| membrane fusion protein [Janthinobacterium sp. Marseille] Length = 416 Score = 368 bits (945), Expect = e-103, Method: Compositional matrix adjust. Identities = 191/398 (47%), Positives = 271/398 (68%), Gaps = 10/398 (2%) Query: 1 MSHDRHSELGIHPLAEGEPQ---QRQQMMRRARLVLVVVLVLLAAGAARTVINRVANARA 57 M+ DRHS +GIH L + QR ++ R R ++V+ +L GAA + R A A Sbjct: 1 MTQDRHSTIGIHGLQAHQAARGIQRLHLLSRTRKFALIVVGVLLIGAAIVIGLRFAKATE 60 Query: 58 LEAGTAERAKVFVRVAPARSSADGQTLALPGTLQGFVQSPISARSGGYLKRWYKDIGAEV 117 L + ++A +V V RSSA L LPGTLQG +++PI+AR+ GY+ RW KDIG V Sbjct: 61 LAEVSKQQATRYVSVTSPRSSATDNVLRLPGTLQGIIEAPINARTNGYVTRWVKDIGDPV 120 Query: 118 KKGDLLAELDTPEIDQQLSQALATRQQAASSMELARSSMARWEALRKKDAVSQQELDERR 177 K+GDLLA +DTPE+ QQL++A AT+ QA ++++LA+S+ RW+ALRK+DAVSQQ+LDE+R Sbjct: 121 KRGDLLAVIDTPEVAQQLNEAKATQAQATTNLQLAKSTFERWDALRKRDAVSQQDLDEKR 180 Query: 178 SAFAQASSNLAAADANVERLRQVEGFKRIVAPFSGIITRRNVDVGDLIDPGAG-RSLFVL 236 +A A A + ++ A V+RL+ G+ RIVAPF GI+TRRN+D+G L+D G R LF L Sbjct: 181 NALAVAVAADNSSKATVQRLQDQLGYSRIVAPFDGIVTRRNIDIGTLVDSGGSTRVLFTL 240 Query: 237 SQTDPLRVYVNVPQSYANLVKPGQQVTVTQAELRGRKFEGKVARTAGSIDPVTRSMQVEV 296 +++DPLRVYV VPQSY+ +K G V +T E+ G+ F+GK+ARTAG+ID VTR++QV + Sbjct: 241 AKSDPLRVYVYVPQSYSTQIKAGNTVGITLNEIPGKVFDGKIARTAGAIDTVTRTLQVAI 300 Query: 297 TLSNADNALLPGAFVQVALPLKPSG----TLLVAADTLMFRRDGSLVAAVDEHNRVRLKK 352 L N D LLPGA+ QVA +K SG +L + +TL+FR +G VA V + +VRL+ Sbjct: 301 DLPNPDGVLLPGAYAQVA--IKASGGSASSLTIPNNTLLFRPEGPRVAVVGDDGKVRLQP 358 Query: 353 VRLGRNFGLTVEVLEGLNGNEKLILNPSDSLAEGDQVE 390 V + R G+ +E+ G+ +KLI+NP+DSL+ GD V Sbjct: 359 VVIARELGVDIELASGVTAQDKLIINPADSLSNGDAVS 396 >gi|152981697|ref|YP_001353374.1| HlyD family secretion protein [Janthinobacterium sp. Marseille] Length = 457 Score = 95.1 bits (235), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/298 (24%), Positives = 141/298 (47%), Gaps = 7/298 (2%) Query: 114 GAEVKKGDLLAELDTPEIDQQLSQALATRQQAASSMELARSSMARWEALRKKDAVSQQEL 173 G +V+ G LLA++D L QA + + ++ AR +AR++ L KDA+ +Q+L Sbjct: 115 GQQVQAGQLLAQIDPRAFQATLGQAEGVLARDKAQLDNARIDLARYKDLLSKDAIPKQQL 174 Query: 174 DERRSAFAQASSNLAAADANVERLRQVEGFKRIVAPFSGIITRRNVDVGDLIDPGAGRSL 233 D + + Q + + V+ + + R+ AP +G + + D+G+++ P + Sbjct: 175 DTQEALVRQLEGTVKSDQGTVDSAKLQLSYTRVTAPIAGRVGLKQSDLGNVVQPADTNGV 234 Query: 234 FVLSQTDPLRVYVNVPQSYANLV----KPGQQVTVTQAELRGRK--FEGKVARTAGSIDP 287 +++QT P+ + +VP + + + + V V + G+ G+VA +ID Sbjct: 235 VIITQTRPIALVFSVPSANVPAITARLRANETVAVEAWDRTGKTKLATGQVATVDNAIDV 294 Query: 288 VTRSMQVEVTLSNADNALLPGAFVQVALPLKPSGTLLVAADTLMFR-RDGSLVAAVDEHN 346 T +++V+ N D+AL P V V + L +L + R G V V+ + Sbjct: 295 TTDTIKVKALFPNLDDALFPNQAVSVVMQLNLLKDVLTVPQAAVLRGSQGFYVYVVNADS 354 Query: 347 RVRLKKVRLGRNFGLTVEVLEGLNGNEKLILNPSDSLAEGDQVEPTLEQPEQKQKAAS 404 V + V+ G + + L EK++++ +D L EG +VE P+Q+ A++ Sbjct: 355 TVSTRVVKPGAIDSGWMAIEAKLEAGEKVVIDGTDRLREGGKVEVIAADPKQRAGASA 412 >gi|152981741|ref|YP_001354626.1| acriflavin resistance lipoprotein A precursor [Janthinobacterium sp. Marseille] Length = 422 Score = 91.7 bits (226), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 89/329 (27%), Positives = 154/329 (46%), Gaps = 22/329 (6%) Query: 81 GQTLALPGTLQGFVQSPISARSGGY-LKRWYKDIGAEVKKGDLLAELDTPEIDQQLSQAL 139 G T LPG ++ + + AR G LKR +++ G++VK G LL ++D ++ + A Sbjct: 49 GVTNELPGRMESIRVAEVRARVPGIVLKRVFRE-GSDVKAGTLLYQIDPAQLQATYNSAD 107 Query: 140 ATRQQAASSMELARSSMARWEALRKKDAVSQQELDERRSAFAQASSNLAAADANVERLRQ 199 A + +++ A R++ L + +AVS+QE D+ +A QA ++LA+A A E R Sbjct: 108 AAVARGEATLATAEQKAKRYKPLVETNAVSKQEYDDVAAAEKQAIADLASAKAARENARL 167 Query: 200 VEGFKRIVAPFSGIITRRNVDVGDLIDPGAGRSLFVLSQTDPLRVYVNVPQSYANLV--- 256 G+ + +P SG I R V G L+ G L ++ Q DP +YVN+ QS AN V Sbjct: 168 SLGYASVTSPISGRIGRALVTEGALVGQGDVTPLAIVQQIDP--IYVNMTQS-ANEVLKL 224 Query: 257 -------------KPGQQVTVTQAELRGRKFEGKVARTAGSIDPVTRSMQVEVTLSNADN 303 K +VT+ + + GK+ + ++D + S+ + + N D Sbjct: 225 KRAMDEGKLKSAGKGAAKVTLVTDDGQEYGRAGKLLFSDLTVDESSGSVTLRAEIPNPDG 284 Query: 304 ALLPGAFVQVALPLKPSGTLLVAADTLMFRR-DGSLVAAVDEHNRVRLKKVRLGRNFGLT 362 LLPG +V+ + + + R GS V V +V + V+ G + G Sbjct: 285 LLLPGMYVRARIEQAVDENAITVPQQAVLRTPGGSAVMVVGADGKVASRPVQTGSSSGTA 344 Query: 363 VEVLEGLNGNEKLILNPSDSLAEGDQVEP 391 + +GL +++I+ + G V+P Sbjct: 345 WIITDGLKEGDQVIVEGLQKVQPGATVKP 373 >gi|152981890|ref|YP_001351977.1| cation efflux system protein [Janthinobacterium sp. Marseille] Length = 389 Score = 87.4 bits (215), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 135/285 (47%), Gaps = 21/285 (7%) Query: 114 GAEVKKGDLLAELDTPEIDQQLSQALATRQQAASSMELARSSMARWEALRKKDAVSQQEL 173 G VK G +LAE+D+P++ A A +A + ++ R R + L + +A++ +++ Sbjct: 108 GDVVKAGQVLAEIDSPDV----GTAYADINKAKADLDHKRRVYERAKDLGEGEAIAAKDV 163 Query: 174 DERRSAFAQASSNLAAADANVERLRQ----VEGFK-RIVAPFSGIITRRNVDVGDLIDPG 228 + ++ + QA + A A+ ++ L + G + +++P +G++T R + PG Sbjct: 164 ENAQADYVQAQAETARAELRLKNLNPNGMVIRGQRISLLSPMNGVVTERTATPALEVSPG 223 Query: 229 AGRSLFVLSQTDPLRVYVNVPQSYANLVKPGQQVTVTQAELRGRKFEGKVARTAGSIDPV 288 LFV++ L + ++VP+ + +K G V + KF K+ + ++DP Sbjct: 224 MSSPLFVVTNPKQLWLMIDVPEKMLSQIKLGSTVAIESDAYPNEKFTAKIVQLGQAVDPN 283 Query: 289 TRSMQVEVTLSNADNALLPGAFVQVALPLKPSGT-LLVAADTLMFRRDGSLVAAVDEHNR 347 +R + + L+N D LLP FV+ AL + SGT + V L+ R S V Sbjct: 284 SRRITIRARLNNPDGKLLPEMFVR-ALVQQDSGTGVAVPNGALVTRGIYSFVFVQTAPGE 342 Query: 348 VRLKKVRLGRNFGLTVEVLEGLNGNEKLI----------LNPSDS 382 + +KV+L V EGL G E ++ LN SDS Sbjct: 343 FQQRKVKLLTRGSSVSYVGEGLKGGESIVTKGALLLDAELNESDS 387 >gi|152982933|ref|YP_001353408.1| cation efflux system transmembrane protein [Janthinobacterium sp. Marseille] Length = 497 Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/281 (24%), Positives = 131/281 (46%), Gaps = 28/281 (9%) Query: 98 ISARSGGYLKRWY-KDIGAEVKKGDLLAELDTPEIDQQLSQALATRQQAASSMELARSSM 156 + +R GY+ + Y + +++G+ +A + P+ + LA ++ + ELA ++ Sbjct: 135 VQSRVTGYIDKLYARSPQQRIQRGEAIASIFVPDWIAPQEEYLALKR--GGNTELAVAAR 192 Query: 157 ARWEALRKKDAVSQQELDERRSAFAQASSNLAAADANVERLRQVEGFKRIVAPFSGIITR 216 R A+ D + Q V+R Q + + +P SG+IT Sbjct: 193 QRMRAMSIPDGLINQ----------------------VDRTGQSQKHFTLTSPVSGVITE 230 Query: 217 RNVDVGDLIDPGAGRSLFVLSQTDPLRVYVNVPQSYANLVKPGQQVTVTQAELRGRKFEG 276 +V G ++ PG ++ ++ + + + VP++ +N V+ G V T + RK+ G Sbjct: 231 LSVRDGAMVTPGM--TIAKVAGLNKVWLVAEVPEALSNTVRSGMAVETTFSGDANRKYNG 288 Query: 277 KVARTAGSIDPVTRSMQVEVTLSNADNALLPGAFVQVALPL-KPSGTLLVAADTLMFRRD 335 +V I TR++Q + L N D +L PG ++V L KP LLV ++ ++ Sbjct: 289 QVREILPGISNATRTLQARLELDNRDGSLTPGMLMRVRLDAEKPVSRLLVPSEAVIANGK 348 Query: 336 GSLVAAVDEHNRVRLKKVRLGRNFGLTVEVLEGLNGNEKLI 376 +V V E+N ++ V GR+ G E+L GL+ +K++ Sbjct: 349 QFVVLVVGENNSMQPMVVTTGRDIGNDTEILSGLSEGQKVV 389 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.130 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 796,350 Number of extensions: 29680 Number of successful extensions: 150 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 132 Number of HSP's successfully gapped: 16 Length of query: 404 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 319 Effective length of database: 906,776 Effective search space: 289261544 Effective search space used: 289261544 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)