BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4483.p (501 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-li... 456 e-129 gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux prot... 268 8e-73 gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthi... 211 9e-56 gi|152981442|ref|YP_001353371.1| outer membrane protein, tolC-li... 208 5e-55 gi|152983076|ref|YP_001352716.1| outer membrane protein [Janthin... 190 2e-49 >gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 475 Score = 456 bits (1173), Expect = e-129, Method: Compositional matrix adjust. Identities = 252/470 (53%), Positives = 323/470 (68%) Query: 3 LRSLLAASTVLTALMLAGCASGPDYVKPAVELPVAWTPEAPWRVMQPQDASPRGPWWERF 62 LR A +++L L+L GCA GPDY +P + AW EA W+ P+D +G WWE F Sbjct: 3 LRRTPAFASLLALLILGGCAVGPDYQRPDAPVAQAWKTEAGWQASNPRDGELKGAWWEIF 62 Query: 63 HDARLNALQQQALAGNQTLAIASARLAQARAQLEVVGAAQSPQVGINTRAARARISANRP 122 DA LNALQ+QAL QT+ IA AR+ QARAQ V ++ P++G +AR R SA RP Sbjct: 63 RDAELNALQEQALKNGQTMVIAQARVDQARAQANVANSSFFPKIGAQAGSARNRTSAERP 122 Query: 123 LTNYNSPNFSTVQNDFALGLNVSYELDFFGRVRRSVEAASASAQQSAADLENTRLLLTAE 182 LTNYNS N S VQNDF VSYELD FGRVRR E A A+AQQ+ AD ENTRL+LTAE Sbjct: 123 LTNYNSQNSSVVQNDFNAAFTVSYELDLFGRVRRQAEGAGATAQQAQADFENTRLVLTAE 182 Query: 183 LASNYFNLRELDIELDVVQRAIALQRKALELATSRHDLGATSGLDVAQQQALLDNTLTQV 242 LA++Y LR+ D E+DV+Q+ + Q KAL+ ++RH+LGA SGLD+ QQQ L T TQ+ Sbjct: 183 LAADYLVLRQTDAEIDVLQQTLGAQTKALDFISARHELGAASGLDLNQQQGLTAATQTQL 242 Query: 243 DILGRQRAQYEHAIATLTGTPAPGFTIAPSLAPIALPAIPLGVPSDVLERRPDIASAERA 302 +L QRA+Y++AIATL G PAP F + +LA PAIPL P+ +LERRPDIA+AERA Sbjct: 243 TLLQDQRARYQNAIATLVGVPAPDFKLPVNLAVTTAPAIPLTAPAALLERRPDIAAAERA 302 Query: 303 MAAANAQIGVASAAFYPSFMLQPGYGVDSRNWGALFNAPSVLWSLGVSASQSLFDAGRLR 362 MAAANAQIGVA +A++PS L YG D+ LF+AP++LWS+GVSA+Q +FD GR Sbjct: 303 MAAANAQIGVARSAYFPSLGLSGLYGSDANQLSNLFSAPALLWSIGVSATQMIFDGGRTS 362 Query: 363 AGVDFSKAGYDATVATYRRTVLTAMQEVEDGITGIAALDRAYGQSQSAIASARRVLDIAN 422 A VDF+KAGY + YR++VL AMQEV+DG+ AL +A ++ A SA R L ++ Sbjct: 363 ANVDFAKAGYQQALGNYRQSVLVAMQEVQDGLNSDVALAQALTSAKVAADSADRSLGLST 422 Query: 423 SRYEGGVTPYLDVITAQQALLNSERQSAQLMGQRLLVSVFLIKALGGDWQ 472 RY+ G+T L+V+ AQQ L+ +RQ QL GQRL+ +V LIKALGG W Sbjct: 423 DRYQSGITTNLEVVVAQQTFLSYKRQEVQLHGQRLVNTVKLIKALGGGWH 472 >gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux protein [Janthinobacterium sp. Marseille] Length = 485 Score = 268 bits (684), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 183/484 (37%), Positives = 274/484 (56%), Gaps = 36/484 (7%) Query: 7 LAASTVLTALMLAGCASG--PDYVKPAVELPVAWTPEAP---------WRVMQPQDASPR 55 LA ST++ AL+LAGC++ P+ +K ++LP A+ ++ W++ P D R Sbjct: 6 LALSTMVAALVLAGCSTARPPEELK--LDLPNAYREQSTVKANELDGAWKLAAPADNKDR 63 Query: 56 GPWWERFHDARLNALQQQALAGNQTLAIASARLAQARAQLEVVGAAQSPQV--GIN-TRA 112 G WW+ F D +L+ L +A N LAIA AR+ ARA VV A + QV G+ TR+ Sbjct: 64 GAWWKVFGDEQLSNLIVEAGNSNLNLAIALARVKDARAIAGVVDADRGVQVDAGVGPTRS 123 Query: 113 ARARISANRPLTNYNSPNFSTVQNDFALGLNVSYELDFFGRVRRSVEAASASAQQSAADL 172 A+ ++ T Y +P L+ +YE+D FGR+ + AA A+ A Sbjct: 124 GNAQGAS----TQYRAP------------LSFAYEVDLFGRLSDASRAARLDAEGQEAAY 167 Query: 173 ENTRLLLTAELASNYFNLRELDIELDVVQRAIALQRKALELATSRHDLGATSGLDVAQQQ 232 + L L +++A YF +R LD E+DV+++ +AL+++AL+L R D G TS LDVAQ + Sbjct: 168 RSVLLALQSDVAQQYFTIRSLDSEVDVLEKTVALRQEALDLTQRRFDAGDTSELDVAQAK 227 Query: 233 ALLDNTLTQVDILGRQRAQYEHAIATLTGTPAPGFTIAPSLAPIALPAIPLGVPSDVLER 292 T +++ + RQRAQ +HA+A L G FT+ + A+ +P G+PSD+LER Sbjct: 228 TEWATTSAELEGVKRQRAQRDHALAILLGKAPAEFTLPVAPLAAAVVTVPSGLPSDLLER 287 Query: 293 RPDIASAERAMAAANAQIGVASAAFYPSFMLQPGYGVDSRNWGALFNAPSVLWSL----G 348 RPDIA A+R +AA++A+IG A AAF+P +L G +S LF S W L G Sbjct: 288 RPDIAQAQRQLAASSARIGAAKAAFFPKLLLTGSAGYESNELRDLFKWSSRSWMLGPVVG 347 Query: 349 VSASQSLFDAGRLRAGVDFSKAGYDATVATYRRTVLTAMQEVEDGITGIAALDRAYGQSQ 408 S LFD GR ++ + + A Y+A VA YR VL Q+VED ++ + LDR + Sbjct: 348 TILSMPLFDGGRNQSNLARADANYEALVANYRLQVLVGFQDVEDNLSALRTLDRQLQFEE 407 Query: 409 SAIASARRVLDIANSRYEGGVTPYLDVITAQQALLNSERQSAQLMGQRLLVSVFLIKALG 468 A+ SA+ +A++RY G Y +VI AQ++ L+S+R + GQR + SV LI+ALG Sbjct: 408 QAVNSAQLASRLADTRYRYGSASYFEVIDAQRSSLSSQRSKIRSTGQRAVASVGLIRALG 467 Query: 469 GDWQ 472 G W+ Sbjct: 468 GGWE 471 >gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthinobacterium sp. Marseille] Length = 481 Score = 211 bits (537), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 151/465 (32%), Positives = 239/465 (51%), Gaps = 11/465 (2%) Query: 12 VLTALMLAGCASGPDYVKPAVELPVAWTPEAPWRVMQPQDASPRGPWWERFHDARLNALQ 71 +L A +L+ C+ P YV+P + PVA P + Q + W F D RL L Sbjct: 8 LLAAGVLSACSMAPKYVRP--DAPVAADYGVPSKADNNQVRAVDIGWRNFFTDPRLQVLI 65 Query: 72 QQALAGNQTLAIASARLAQARAQLEVVGAAQSPQVGINTRAARARISANRPLTNYNSPNF 131 A+A N+ L +A+ R+ +ARA + A P + +N +RAR+ A+ ++N S Sbjct: 66 GNAIANNRDLRVAALRIEEARALYNIQSADLLPTLNVNATGSRARVPAS--ISNTGS--- 120 Query: 132 STVQNDFALGLNVS-YELDFFGRVRRSVEAASASAQQSAADLENTRLLLTAELASNYFNL 190 S V +++ +GL ++ +ELDFFGRVR +AA A+ + ++ L +E+A Y + Sbjct: 121 SVVSSNYQVGLGLAAFELDFFGRVRSLSDAALAAYLSTEEAQRAAQISLVSEVAKAYLSE 180 Query: 191 RELDIELDVVQRAIALQRKALELATSRHDLGATSGLDVAQQQALLDNTLTQVDILGRQRA 250 R + D+ ++ + +A +L+ R ++GA+S LD+ +ALL + RQRA Sbjct: 181 RSFAEQQDLARQTYESRVEAYKLSKQRFEVGASSALDLRNDEALLQTARAAELLAQRQRA 240 Query: 251 QYEHAIATLTGTPAPGFTIAPSLAP-IALPAIPLGVPSDVLERRPDIASAERAMAAANAQ 309 Q +A+ L G P A +L+ L IP G+PSD+L +RPDI SAE+ + +ANA Sbjct: 241 QAMNALTLLVGQPLTDLPPAQALSSQTILTDIPAGLPSDLLTQRPDIRSAEQTLLSANAN 300 Query: 310 IGVASAAFYPSFMLQPGYGVDSRNWGALFNAPSVLWSLGVSASQSLFDAGRLRAGVDFSK 369 IG A AAF+P L G G S LF S WS +FDAGR R ++ ++ Sbjct: 301 IGAARAAFFPRISLTAGLGTSSNELAGLFEGGSRSWSFAPQLVLPIFDAGRNRGNLNLAE 360 Query: 370 AGYDATVATYRRTVLTAMQEVEDGITGIAALDRAYGQSQSAIASAR-RVLDIANSRYEGG 428 D VA Y +++ A +EV D + LD+ ++Q + A+ A R++ G Sbjct: 361 VRKDIAVANYEKSIQVAFREVSDALVARDLLDQQV-EAQRLVQEAQAERFKFATQRFQNG 419 Query: 429 VTPYLDVITAQQALLNSERQSAQLMGQRLLVSVFLIKALGGDWQE 473 + LDV+ AQ+ L ++ Q+ RL +V L ++LGG E Sbjct: 420 IASSLDVLDAQRELFTAQLSLVQVRLTRLTNAVDLYRSLGGGLVE 464 >gi|152981442|ref|YP_001353371.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 480 Score = 208 bits (530), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 146/415 (35%), Positives = 226/415 (54%), Gaps = 4/415 (0%) Query: 58 WWERFHDARLNALQQQALAGNQTLAIASARLAQARAQLEVVGAAQSPQVGINTRAARARI 117 WW F D LN L+ + + GN+ L A++A ARA + +A+ P + + +R Sbjct: 54 WWTLFQDPVLNDLEGRLVVGNENLKSLVAQVAAARAAVAASYSARLPTLSVGLAGSRD-- 111 Query: 118 SANRPLTNYNSPNFSTVQNDFALGLNVSYELDFFGRVRRSVEAASASAQQSAADLENTRL 177 + P + S N+ +L N S+E+D +GR+ ++ A A+ Q S DL RL Sbjct: 112 --SNPSSTTRSTTVQNPSNNVSLSGNASWEVDLWGRLAQATTGAQANLQASVDDLAAARL 169 Query: 178 LLTAELASNYFNLRELDIELDVVQRAIALQRKALELATSRHDLGATSGLDVAQQQALLDN 237 A LA YF+LR D +L V++R++A +++L+L R+ G + +DV Q Q L Sbjct: 170 SAQATLAQTYFSLRTTDAQLSVLERSVAAYQRSLDLTQFRYGGGVVARVDVLQAQTQLKA 229 Query: 238 TLTQVDILGRQRAQYEHAIATLTGTPAPGFTIAPSLAPIALPAIPLGVPSDVLERRPDIA 297 Q+ QRA EHAIA L G P + + + P +P +P+ +LERRPDIA Sbjct: 230 AQAQLAEAIAQRAILEHAIAVLLGVPPSALALERNASLPQAPLVPQMLPTTLLERRPDIA 289 Query: 298 SAERAMAAANAQIGVASAAFYPSFMLQPGYGVDSRNWGALFNAPSVLWSLGVSASQSLFD 357 +A+R +AAA AQIGVA AA++PS +L G G + + L +AP++ WSLG S +Q++FD Sbjct: 290 AAQRRVAAAYAQIGVAHAAYFPSLVLSAGGGYQNSSLSNLISAPNLFWSLGASVAQAIFD 349 Query: 358 AGRLRAGVDFSKAGYDATVATYRRTVLTAMQEVEDGITGIAALDRAYGQSQSAIASARRV 417 G+ + +++ D + YR+TVLTA+QEVED + A L + Q ++ +A+R Sbjct: 350 GGQRQLASAQAQSVADQATSAYRQTVLTALQEVEDNLILAAQLQQEAQLQQESLEAAQRT 409 Query: 418 LDIANSRYEGGVTPYLDVITAQQALLNSERQSAQLMGQRLLVSVFLIKALGGDWQ 472 L+I +Y G YL+V AQ L SE +RL + L+K + G W+ Sbjct: 410 LEITLDQYRAGTVSYLNVAIAQTTALVSENNLLSTQNRRLAATNILLKNIAGRWE 464 >gi|152983076|ref|YP_001352716.1| outer membrane protein [Janthinobacterium sp. Marseille] Length = 476 Score = 190 bits (482), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 153/480 (31%), Positives = 237/480 (49%), Gaps = 29/480 (6%) Query: 7 LAASTVLTALMLAGCASGPDYVKPAVELPVAWTPEAPWRVMQPQDASP-----RGPWWER 61 L+ +TVL+++ L GC+ P Y +P +LPV+ T P + + + SP W E Sbjct: 12 LSYATVLSSI-LVGCSLAPVYERP--DLPVSKT--WPDQRLANERNSPDVTASEIDWKEF 66 Query: 62 FHDARLNALQQQALAGNQTLAIASARLAQARAQLEVVGAAQSPQVGINTRAARARISANR 121 F D L+ + Q AL N+ L +A+ + +ARA V GA + P VG+ T AR R A+ Sbjct: 67 FIDQNLSQVIQIALNNNRDLRVAALNIDRARALYGVQGADRLPSVGVGTSGARQRTPAD- 125 Query: 122 PLTNYNSPNFSTVQNDFALGLNV-SYELDFFGRVRRSVEAASASAQQSAADLENTRLLLT 180 N FS V + ++ G+ + S+ELDFFGR++ +AA + + ++ L Sbjct: 126 ----LNDKGFSDVTSTYSAGIGITSFELDFFGRIKNLSQAALERYIATDEARRSAQIALI 181 Query: 181 AELASNYFNLRELDIELDVVQRAIALQRKALELATSRHDLGATSGLDVAQQQALLDNTLT 240 +E+A Y L + ++ + + S + GA+S LD+ Q ++LL+ Sbjct: 182 SEVAMRYQALAADHRLWQLANNTLSTRLDSHARQQSLLEQGASSELDLRQSESLLEAARV 241 Query: 241 QVDILGRQRAQYEHAIATLTGTPAPGFTIAPSLAPI----ALPA----IPLGVPSDVLER 292 + RQRA ++A+ L G TI PSL P ALPA IP+G+PSD++ Sbjct: 242 ALAQQTRQRAVDQNALRLLVGA-----TIDPSLLPSGMSDALPAMLADIPVGLPSDLIST 296 Query: 293 RPDIASAERAMAAANAQIGVASAAFYPSFMLQPGYGVDSRNWGALFNAPSVLWSLGVSAS 352 RPDI E + + NA IG A AAF+P L G S LF A S WS S Sbjct: 297 RPDIRQHEAILRSENASIGAARAAFFPRISLTGSLGTSSSELSGLFEAGSRSWSFLPQVS 356 Query: 353 QSLFDAGRLRAGVDFSKAGYDATVATYRRTVLTAMQEVEDGITGIAALDRAYGQSQSAIA 412 +FD GR RA ++ +KA D +A Y +++ A +EV D + G L S + Sbjct: 357 LPIFDVGRNRANLNVAKADRDIAIAEYEKSIQIAFREVADALAGTDTLKEELRASTAQER 416 Query: 413 SARRVLDIANSRYEGGVTPYLDVITAQQALLNSERQSAQLMGQRLLVSVFLIKALGGDWQ 472 + R ++ RYE G YL+ + AQ++L ++++ + + L KALGG W+ Sbjct: 417 AERVRYVLSKQRYESGYASYLEFLDAQRSLFAIQQKTIVTELAEMQNKIGLYKALGGGWK 476 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.129 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 947,539 Number of extensions: 34072 Number of successful extensions: 181 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 150 Number of HSP's successfully gapped: 12 Length of query: 501 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 414 Effective length of database: 899,382 Effective search space: 372344148 Effective search space used: 372344148 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)