BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4482.p (516 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 439 e-124 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 427 e-120 gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (... 423 e-119 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 422 e-119 gi|152981471|ref|YP_001352860.1| methyl-accepting chemotaxis pro... 414 e-117 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 439 bits (1129), Expect = e-124, Method: Compositional matrix adjust. Identities = 275/531 (51%), Positives = 353/531 (66%), Gaps = 32/531 (6%) Query: 1 MNWFNNLKIAKKLILSFAAVIVLTVALGVFAIIELKVVNQ----------ASTDMASNWL 50 M +F+N+KI +L+L F V+ L++A+ I +L V+ A M S+W Sbjct: 1 MIFFSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVSDWA 60 Query: 51 PTIKAAQSIQASLPRMRISELQMITAVTPAEREDAIKAIKSRLDILTKQRAAYEALISEA 110 KA+ + + + L +A A+ K ++I+ K E L++ Sbjct: 61 AITKASIARTIGVAKSADPALAQFSAKFAADDS------KQSMEIIQK----LEPLLNTD 110 Query: 111 EEKLAYDKFSKSFASYLELDKKLAEISGAGKEEEARALFKGDSNKTFRSMLESMDEIIKI 170 +EK Y K S+L + + ++ GKE EA F S E +++ Sbjct: 111 QEKELYAKILDVRKSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEFVEL 170 Query: 171 N----DAGSARSDQTANDVFNAARTWIIGLLATIVVIAFGLAAA--VARAVSRPLNEAVS 224 DAG+A+ +DV AA T + LL+ +V +AFG+ A + ++RPL AV Sbjct: 171 ERKQMDAGTAQ----LSDV-EAASTRQLMLLSAMV-LAFGIFCAWRLTIGITRPLKTAVD 224 Query: 225 VAERVAQGDLTVQINTASKDETGMLMHSLRTMNDSLHKIVSEVRYGTDAISTASQEIASG 284 A RVA GDLT I SKDE G L+ +L+ MND L +IV EVR GT+ I+TAS EIA+G Sbjct: 225 AARRVAGGDLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAG 284 Query: 285 NLDLSSRTEQQAGSLEETASAMEELTATVKQNADNARQANQLAASASDIASQGGEVVSQV 344 NLDLSSRTEQQA SLEETAS+MEELT+TVKQNADNARQANQLA SAS++A +GG+VVSQV Sbjct: 285 NLDLSSRTEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQV 344 Query: 345 VQTMEGITESSSRIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA 404 VQTM I ESS +I DII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLA Sbjct: 345 VQTMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLA 404 Query: 405 QRSAAAAKEIKQLIDDSVEKVGAGSQLVERAGATMSDVVSSVRRVTGVVAEISAASSEQS 464 QRSA+AAKEIK LI DSV KV G++LV AGATM ++V+S+RRVT ++ EI+AAS EQS Sbjct: 405 QRSASAAKEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQS 464 Query: 465 TGIEEINRAVTQMDEVTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKIE 515 GIE+IN+A+ QMD VTQQNA+LVEEAAAAA+S+QDQA +L QVV FK++ Sbjct: 465 AGIEQINQAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKLD 515 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 427 bits (1097), Expect = e-120, Method: Compositional matrix adjust. Identities = 267/521 (51%), Positives = 362/521 (69%), Gaps = 18/521 (3%) Query: 4 FNNLKIAKKLILSFAAVIVLTVALGVFAIIELKVVNQASTDMASNWLPTIKAAQSIQASL 63 NLKI ++L LSF ++++L V L A + +N A +++ + P A ++ L Sbjct: 1 MKNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60 Query: 64 PRMRISELQMITAVTPAEREDAIKAIKSRLDILTKQRAAYEALISEAEEKLAYDKFSKSF 123 ++ M A+ E+ AI++ L + K + + E E+ + ++ ++ Sbjct: 61 NQI---ARNMRNALLMTEK----AAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTI 113 Query: 124 AS-------YLELDKKLAEISGAGKEEEARALFKGDSNKTFRSMLESMDEIIKINDAGSA 176 A +L L +++ AG ++EA AL + S L S+D++I + Sbjct: 114 AGLQADRSKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMK 173 Query: 177 RSDQTANDVFNAART-WIIGLLATI-VVIAFGLAAAVARAVSRPLNEAVSVAERVAQGDL 234 +S AN A++T +IG+ + I V+IA A R+++RPL++AV +A +VA GDL Sbjct: 174 KSGAEAN--AKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDL 231 Query: 235 TVQINTASKDETGMLMHSLRTMNDSLHKIVSEVRYGTDAISTASQEIASGNLDLSSRTEQ 294 T I SKDETG L+ +L+ MN+ L KIV++VR GTD I++AS +IA+GNLDLSSRTEQ Sbjct: 232 TGSIVVESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQ 291 Query: 295 QAGSLEETASAMEELTATVKQNADNARQANQLAASASDIASQGGEVVSQVVQTMEGITES 354 QA SLEETAS+MEELT+TVKQNA+NARQ+NQLA SAS++A +GG VVS+VV TM I +S Sbjct: 292 QASSLEETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDS 351 Query: 355 SSRIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEI 414 + +I DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEI Sbjct: 352 AKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEI 411 Query: 415 KQLIDDSVEKVGAGSQLVERAGATMSDVVSSVRRVTGVVAEISAASSEQSTGIEEINRAV 474 K+LI DSV+KV GS+LV+ AGATM +VV SV+RVT +++EI+AAS EQ+ GIE+IN+AV Sbjct: 412 KELIGDSVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAV 471 Query: 475 TQMDEVTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKIE 515 QMD+VTQQNAALVEEAAAAA+SLQ QA+ LSQVV VFK++ Sbjct: 472 MQMDQVTQQNAALVEEAAAAAESLQGQASHLSQVVGVFKLD 512 >gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 423 bits (1088), Expect = e-119, Method: Compositional matrix adjust. Identities = 269/521 (51%), Positives = 352/521 (67%), Gaps = 19/521 (3%) Query: 3 WFNNLKIAKKLILSFAAVIVLTVALGVFAIIELKVVNQASTDMASNWLPTIKAAQSIQAS 62 F N+K+ KL L F +LT+ + VFA++ +NQ +A+ + + + + Sbjct: 1 MFANMKVGSKLSLGFGVTALLTLLIAVFALMR---INQIDGVIATQNEIRTQQLERLYTA 57 Query: 63 LPRMRISELQMITAVTPAEREDAIKAIKSRLDILTKQRAAYEALISEAEEKLA----YDK 118 + + L A + DA+K LDIL +Q+A Y +++ ++K Sbjct: 58 REALGQTGLAARNAYIFTNKADALK----ELDILDEQKAIYLDALAKMTPFFKGDANFEK 113 Query: 119 FSKSFASYLELDKKLAEISGAGKEEEARALFKGDSNKTFRSMLESMDEII----KINDAG 174 SK + E K+ + A + E + + R ++ + ++ KI D Sbjct: 114 VSKGLLTMAEELKRPRQFRDADQMEAFGKFLVNECSPLRRQIVADIGTVVTSMQKIVDVK 173 Query: 175 SARSDQTANDVFNAARTWIIGLLATIVVIAFGLAAAVARAVSRPLNEAVSVAERVAQGDL 234 S Q AN + T II + A ++++ GL ++R+++RPLNEAV VA+ VA GDL Sbjct: 174 S----QEANLAAQQSITIIIAISAVALLLSIGLGIVISRSITRPLNEAVLVAQTVASGDL 229 Query: 235 TVQINTASKDETGMLMHSLRTMNDSLHKIVSEVRYGTDAISTASQEIASGNLDLSSRTEQ 294 T QIN SKDETG L+ +L+ MN SL IV EVR GT ++TAS +IASGN+DLSSRTE+ Sbjct: 230 TSQINVKSKDETGQLLQALKDMNQSLIGIVDEVRSGTATMATASNQIASGNMDLSSRTEE 289 Query: 295 QAGSLEETASAMEELTATVKQNADNARQANQLAASASDIASQGGEVVSQVVQTMEGITES 354 QA SLEETAS+MEELT+TVKQNADNARQAN L+ SAS+IA +GG+VVS+VV TM GI +S Sbjct: 290 QASSLEETASSMEELTSTVKQNADNARQANSLSLSASEIAVKGGQVVSEVVVTMNGINDS 349 Query: 355 SSRIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEI 414 + +I DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAKEI Sbjct: 350 AKKITDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEI 409 Query: 415 KQLIDDSVEKVGAGSQLVERAGATMSDVVSSVRRVTGVVAEISAASSEQSTGIEEINRAV 474 K LIDDSV +V GS+LV +AG+TM++VV SV+RVT ++AEI AAS EQS GIE++N+A+ Sbjct: 410 KALIDDSVGRVDTGSKLVVQAGSTMTEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAI 469 Query: 475 TQMDEVTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKIE 515 QMD VTQQNAALVEEAAAAA SL+DQA +L Q VSVFKI+ Sbjct: 470 AQMDHVTQQNAALVEEAAAAAGSLKDQAVKLEQTVSVFKID 510 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 422 bits (1085), Expect = e-119, Method: Compositional matrix adjust. Identities = 264/521 (50%), Positives = 359/521 (68%), Gaps = 22/521 (4%) Query: 6 NLKIAKKLILSFAAVIVLTVALGVFAIIELKVVNQASTDMASNWLPTIKAAQSIQASLPR 65 NLKI+ +L FA ++ L V + V I+ L+ V ++ M LP + AQ L Sbjct: 5 NLKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTMLPKERLAQEW---LSA 61 Query: 66 MRISELQMITAVTPAEREDA------IKAIKSRLDILTKQRAAYEALISEAEEKLAYDKF 119 + ++ + + + ED + R + L K+ E++I E+K +++ Sbjct: 62 VDVNGARTLASAKTTSAEDQAFFQKQMDKTSVRANELQKE---IESMIKTPEDKRLFEEL 118 Query: 120 SKSFASYLELDKKLAEISGAGKEEEARALFKGDSNKTFRSMLESMDEIIK-----INDAG 174 + +Y ++ + + ++ GK EA+ L + S+D +++ I++AG Sbjct: 119 VVARNAYRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQNEKKLIDEAG 178 Query: 175 SARSDQTANDVFNAARTWIIGLLATIVVIAFGLAAAVARAVSRPLNEAVSVAERVAQGDL 234 + S Q+A F + R+ +IGLLA V + A +A +++RPLN AV+VA VA GDL Sbjct: 179 T--SIQSA---FLSGRSLLIGLLAAAVALGVFFAWRLAISITRPLNRAVTVARTVASGDL 233 Query: 235 TVQINTASKDETGMLMHSLRTMNDSLHKIVSEVRYGTDAISTASQEIASGNLDLSSRTEQ 294 + +I +S DETG LM +L+ M SL+K VSEVR GT+ I+TAS++IASGNLDLSSRTE+ Sbjct: 234 SAKIEVSSNDETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTEE 293 Query: 295 QAGSLEETASAMEELTATVKQNADNARQANQLAASASDIASQGGEVVSQVVQTMEGITES 354 QA SL ETA++M +LT+TV+QNADNARQAN LA SASD+A +GG VVS+VV TM I ES Sbjct: 294 QASSLGETAASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASINES 353 Query: 355 SSRIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEI 414 + +I DII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAKEI Sbjct: 354 ARKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEI 413 Query: 415 KQLIDDSVEKVGAGSQLVERAGATMSDVVSSVRRVTGVVAEISAASSEQSTGIEEINRAV 474 K LI DSV KV AGS+LV AG+TM+++V SV+RVT ++AEI AAS EQS+GI+++N+A+ Sbjct: 414 KILIGDSVGKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQAI 473 Query: 475 TQMDEVTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKIE 515 QMD+VTQQNAALVEEAAAAA+SLQDQA L++VVS FK++ Sbjct: 474 GQMDQVTQQNAALVEEAAAAAESLQDQAGNLARVVSQFKLD 514 >gi|152981471|ref|YP_001352860.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 414 bits (1065), Expect = e-117, Method: Compositional matrix adjust. Identities = 270/515 (52%), Positives = 351/515 (68%), Gaps = 11/515 (2%) Query: 6 NLKIAKKLILSFAAVIVLTVALGVFAIIELKVVNQASTDMASNWLPTIKAAQSIQASLPR 65 N+KI +L L F +++L A+G I+ L+ +N AS ++ L KAA+ + Sbjct: 5 NMKIGVRLGLGFGLILLLVAAMGATGIMRLENINNASRNLVDQSLKKQKAAEDWLLATSV 64 Query: 66 MRISELQMITAVTPAEREDAIKAIKSRLDILTKQRAAYEALISEAEEKLAYDKFSKSFAS 125 + + ++ + P ++ KAI ++ +T + EA + EEK + + K A Sbjct: 65 NGVRTVALVKSADPETQQFFQKAITAQSKQITDIQNGVEASLVTPEEKQLFAEVGKKRAV 124 Query: 126 YLELDKKLAEISGAGKEEEARALFKGDSNKTFRSMLESMDEIIKINDAGSARSDQTANDV 185 Y++L K + + G E EA+ L + +ES+ E++ +DQ+ Sbjct: 125 YVDLRKAIFAVKEKGNEAEAKQLIDSKMIPALDAYVESVREVLAHYQNEVKLADQSITAD 184 Query: 186 FNAAR-TWIIGLLATIVVIAFGLAAAVAR----AVSRPLNEAVSVAERVAQGDLTVQIN- 239 + + R T IIG VIA L A +A ++RPL EA+SVAE VA+GDLT + Sbjct: 185 YASGRMTLIIG-----AVIALLLGALIAWRLTVGITRPLQEALSVAESVAEGDLTARSTM 239 Query: 240 TASKDETGMLMHSLRTMNDSLHKIVSEVRYGTDAISTASQEIASGNLDLSSRTEQQAGSL 299 A+ DE G+L+ +LR M DSL K V+++R GTD I+TAS EIASGNLDLSSRTEQQA SL Sbjct: 240 PAANDEAGLLLKALRRMQDSLAKTVTQIRMGTDTIATASSEIASGNLDLSSRTEQQASSL 299 Query: 300 EETASAMEELTATVKQNADNARQANQLAASASDIASQGGEVVSQVVQTMEGITESSSRIA 359 EETAS+MEELT+TVKQNADN+RQANQLA +AS +A +GG VVS+VV TM I ES+ +I Sbjct: 300 EETASSMEELTSTVKQNADNSRQANQLAVAASAVAVKGGSVVSEVVNTMGSINESAKKIV 359 Query: 360 DIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLID 419 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAAKEIK LI Sbjct: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKALIG 419 Query: 420 DSVEKVGAGSQLVERAGATMSDVVSSVRRVTGVVAEISAASSEQSTGIEEINRAVTQMDE 479 DSVEKV AGS+LV AG TM ++V V+RV ++AEI+AAS EQS GIE++N+A+ QMD+ Sbjct: 420 DSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAIGQMDQ 479 Query: 480 VTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKI 514 VTQQNAALVEEAAAAA+SLQDQA L+Q VSVF+I Sbjct: 480 VTQQNAALVEEAAAAAESLQDQAKNLAQAVSVFQI 514 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.311 0.123 0.310 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 763,401 Number of extensions: 23650 Number of successful extensions: 206 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 21 Length of query: 516 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 429 Effective length of database: 899,382 Effective search space: 385834878 Effective search space used: 385834878 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)