BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4481.p (247 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980160|ref|YP_001353976.1| phosphate regulon two-component... 147 6e-37 gi|152981322|ref|YP_001355016.1| two components system response ... 147 8e-37 gi|152980825|ref|YP_001354044.1| heavy metal response regulator ... 144 5e-36 gi|152981180|ref|YP_001353103.1| osmolarity response regulator [... 125 2e-30 gi|152981318|ref|YP_001352484.1| response regulator of copper se... 125 3e-30 >gi|152980160|ref|YP_001353976.1| phosphate regulon two-component response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 147 bits (371), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 133/229 (58%), Gaps = 12/229 (5%) Query: 18 ILIVEDEPKLAELLQKYLALAGYTARHVARGDAALEAVRTQRPDLILLDIMLPGMDGWEI 77 ILIVEDEP + EL+ L AG+ V A + ++ + P LILLD MLP G + Sbjct: 8 ILIVEDEPPIIELVTFTLKGAGWNVAAVQNAGDAWDFIQQRLPQLILLDWMLPDQSGLRL 67 Query: 78 CRQLRS---FSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRN 134 ++R+ F+++P++MLTA++ EED++ GL+ GADDY+ K PFSPRE+ AR+ ++LRR Sbjct: 68 LSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTK-PFSPRELTARINALLRR- 125 Query: 135 ALVQRAVQTQQPRRTDWPLHIDEASHQASVRGEPLNLTPLELRLLKTFAAAPGQVFSRDQ 194 + + Q T + +D S S+ E +++ E +LLK F A P +VFSR Q Sbjct: 126 ----KTPEHSQTLMTAGNISLDPVSCSVSMNDEKIDIGHAEFKLLKFFLAHPDRVFSRSQ 181 Query: 195 LLNHLHDDDRFVTDRVVDTHIKNLRRKLEPFFPGHNAIQAVYGVGYSFA 243 LL+ + D + +R VD H+ LR+ L+ + I+ V VGY + Sbjct: 182 LLDKVWGDHVVIEERTVDVHVLRLRKALK---DAEHLIKTVRSVGYMLS 227 >gi|152981322|ref|YP_001355016.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 246 Score = 147 bits (370), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 93/232 (40%), Positives = 131/232 (56%), Gaps = 8/232 (3%) Query: 18 ILIVEDEPKLAELLQKYLALAGYTARHVARGDAALEAVRTQRPDLILLDIMLPGMDGWEI 77 ILIV+D+ ++ ELL YL G A G + DLI+LD+MLPG DG + Sbjct: 7 ILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGEDGLTL 66 Query: 78 CRQLRS--FSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRNA 135 CR+LR+ + +PVLMLTAR EE DR+ GLE+GADDY+ K PF+ RE+ AR++S+LRR Sbjct: 67 CRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSK-PFAVRELFARIRSVLRRAR 125 Query: 136 LVQRAVQTQQPRR----TDWPLHIDEASHQASVRGEPLNLTPLELRLLKTFAAAPGQVFS 191 ++ +Q +P + DW L A H +G + L+ E RLL+ F P +V + Sbjct: 126 MLPANLQVSEPAQFLVFGDWKLDT-TARHLLDTQGTMVALSGAEYRLLRVFLDHPQRVLT 184 Query: 192 RDQLLNHLHDDDRFVTDRVVDTHIKNLRRKLEPFFPGHNAIQAVYGVGYSFA 243 RDQLLN D DR +D I LR++L+ I+ + GY F+ Sbjct: 185 RDQLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVFS 236 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 144 bits (363), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 92/228 (40%), Positives = 129/228 (56%), Gaps = 18/228 (7%) Query: 18 ILIVEDEPKLAELLQKYLALAGYTARHVARGDAALEAVRTQRPDLILLDIMLPGMDGWEI 77 IL+VEDE K E L+K L AG+ G L+ + +L++LD+MLP +DGW++ Sbjct: 3 ILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGWQL 62 Query: 78 CRQLRSFSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRR---- 133 R+LR D PVL LTAR E EDR++GLELGADDY+ K PFS E++ARV+++LRR Sbjct: 63 LRELRKVRDTPVLFLTARDEVEDRVKGLELGADDYLVK-PFSFMELIARVRTLLRRGPVR 121 Query: 134 -NALVQRAVQTQQPRRTDWPLHIDEASHQASVRGEPLNLTPLELRLLKTFAAAPGQVFSR 192 ++L++ A + ID + + GE L+LT E LL A G+V SR Sbjct: 122 ESSLIEIA-----------DMQIDVMKRRVTRNGERLDLTAKEFSLLHLLAQRRGEVLSR 170 Query: 193 DQLLNHLHDDDRFVTDRVVDTHIKNLRRKLEPFFPGHNAIQAVYGVGY 240 + + + D + VVD I+ LR KL+ P IQ V G+GY Sbjct: 171 SLIASQVWDMNFDSDTNVVDVAIRRLRAKLDDPHP-RKLIQTVRGIGY 217 >gi|152981180|ref|YP_001353103.1| osmolarity response regulator [Janthinobacterium sp. Marseille] Length = 248 Score = 125 bits (314), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/212 (37%), Positives = 117/212 (55%), Gaps = 4/212 (1%) Query: 34 YLALAGYTARHVARGDAALEAVRTQRPDLILLDIMLPGMDGWEICRQLRSFSD-VPVLML 92 YL+ G+ A + +R DL++LD+MLPG DG ICR+LR D P++ML Sbjct: 31 YLSEQGFNVVTAENAQAMNKLWLRERYDLLVLDLMLPGEDGLSICRRLRGAGDKTPIIML 90 Query: 93 TARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRNALVQR-AVQTQQPRR-TD 150 TA+ E+ DR+ GLE+GADDY+ K PF+PRE+VAR+ ++LRR + ++ P+ T Sbjct: 91 TAKGEDVDRIVGLEMGADDYLAK-PFNPRELVARISAVLRRVGPEEIPGAPSETPQSFTF 149 Query: 151 WPLHIDEASHQASVRGEPLNLTPLELRLLKTFAAAPGQVFSRDQLLNHLHDDDRFVTDRV 210 +D + E + LT E +LK FA Q SR++L+ + V DR Sbjct: 150 GEFVLDLGTRTLKKNDETVPLTTGEFSVLKVFARHARQPLSREKLMELARGREYEVFDRS 209 Query: 211 VDTHIKNLRRKLEPFFPGHNAIQAVYGVGYSF 242 +D I LR+ +EP IQ V+G+GY F Sbjct: 210 LDVQISRLRKLIEPDPSTPLYIQTVWGLGYVF 241 >gi|152981318|ref|YP_001352484.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] Length = 227 Score = 125 bits (313), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/230 (36%), Positives = 125/230 (54%), Gaps = 10/230 (4%) Query: 18 ILIVEDEPKLAELLQKYLALAGYTARHVARGDAALEAVRTQRPDLILLDIMLPGMDGWEI 77 IL+VEDE K A+ +++ L AG+ G + DL+LLD+MLP +DGW I Sbjct: 3 ILVVEDENKTADYIRQGLREAGFVVDVARNGLDGHHMAMNEAYDLVLLDVMLPDVDGWHI 62 Query: 78 CRQLRSFS-DVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRNAL 136 + LR VPVL LTAR +DR++GLELGAD Y+ K PF+ E++A V+++LRR Sbjct: 63 VKSLRDAGHQVPVLFLTARGSVDDRVKGLELGADSYLIK-PFAFSELLAHVRTLLRR--- 118 Query: 137 VQRAVQTQQPRRTDWPLHIDEASHQASVRGEPLNLTPLELRLLKTFAAAPGQVFSRDQLL 196 R V Q + L +D +A+ G+ + LT E LL+ A G+V R + Sbjct: 119 --RNVPAQSDQLQIADLVLDLTRRKATRMGQRIVLTNKEFALLELLARRRGEVLPRSLIA 176 Query: 197 NHLHDDDRFVTDRVVDTHIKNLRRKL-EPFFPGHNAIQAVYGVGYSFALP 245 + + D + V+D I+ LR K+ EP+ P I V G+GY+ +P Sbjct: 177 SQIWDMNFDSNTNVIDVAIRRLRAKMDEPYEP--KLIHTVRGMGYTLDIP 224 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.138 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 466,128 Number of extensions: 14241 Number of successful extensions: 158 Number of sequences better than 1.0e-08: 36 Number of HSP's gapped: 116 Number of HSP's successfully gapped: 36 Length of query: 247 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 166 Effective length of database: 921,564 Effective search space: 152979624 Effective search space used: 152979624 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)