BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4480.p (484 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982169|ref|YP_001352554.1| sensory box histidine kinase/re... 107 1e-24 gi|152981014|ref|YP_001353510.1| two-component regulatory protei... 107 2e-24 gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing... 107 2e-24 gi|152982747|ref|YP_001353102.1| two-component sensor kinase Env... 103 2e-23 gi|152980724|ref|YP_001353975.1| two-component system sensor kin... 103 2e-23 >gi|152982169|ref|YP_001352554.1| sensory box histidine kinase/response regulator [Janthinobacterium sp. Marseille] Length = 702 Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 114/215 (53%), Gaps = 7/215 (3%) Query: 251 ERNEKLRREFMADVSHELRTPLGILNGQLE-ALEDGVLQPDAQTLRSLKSEVEHLNKLVG 309 E + + EF+A +SHE+RTP+ + G ++ AL + + + L + + E L ++ Sbjct: 326 ESANRAKSEFLAVMSHEIRTPMNGMLGMMQLALAETSDRTQREHLETAQYSAEALLSILN 385 Query: 310 DLYDLSLADAGALTYRHADIDLTPLLQDSAATYAERFNQRGMSLTTALPAAM--LVHADG 367 D+ D S ++G L + A DL + A R ++L PA + ++ D Sbjct: 386 DILDFSKLESGNLQFEAAQFDLLKTMDSVINLMASRSCDASLALAVECPAEIPRMLVGDA 445 Query: 368 ARLQQLFNNLFENSLRYTDTGG-RLQVHA-QLQQQQWHLFFD--DSEPGVPPEVMARLFE 423 RL+Q+ NL N+L++T+ GG L+V L Q + F DS G+ PE ARLF+ Sbjct: 446 NRLRQVLLNLINNALKFTEQGGVTLKVALLNLNAGQARMRFSVIDSGIGIAPEAQARLFQ 505 Query: 424 RFFRVETSRNRASGGAGLGLAICRRIIDAHQGTIG 458 F + + S +R GG GLGL+IC++I+D G+IG Sbjct: 506 AFSQADNSISRRFGGTGLGLSICKKIVDMQGGSIG 540 >gi|152981014|ref|YP_001353510.1| two-component regulatory protein sensor kinase for high-affinity potassium transport system [Janthinobacterium sp. Marseille] Length = 908 Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 112/225 (49%), Gaps = 6/225 (2%) Query: 253 NEKLRREFMADVSHELRTPLGILNGQLEAL---EDGVLQPDAQTLRSLKSEVEHLNKLVG 309 +E+LR +A +SH+LRTPL L G E+L + + + +L E + LV Sbjct: 667 SERLRNSLLAAISHDLRTPLTALVGLSESLTRSKPELAAAQQELAHALHEEALRMGNLVT 726 Query: 310 DLYDLSLADAGALTYRHADIDLTPLLQDSAATYAERFNQRGMSLTTALPAAMLVHADGAR 369 +L D++ +G + ++ S+ + R T P LV+ D Sbjct: 727 NLLDMARIQSGEVKLNLQWQQFEEVV-GSSLRAVQSLLGRHQVHTRLAPGLPLVNFDAVL 785 Query: 370 LQQLFNNLFENSLRYTDTGGRLQVHAQLQQQQWHLFFDDSEPGVPPEVMARLFERFFRVE 429 ++++ NL EN+ +YT G ++ + A+L Q + D+ PG+PP +FE+F R E Sbjct: 786 IERVLCNLLENASKYTPAGSQITIAAELSGQYLDVAVYDNGPGLPPGQEEAIFEKFTRGE 845 Query: 430 TSRNRASGGAGLGLAICRRIIDAHQGTIGASDSPLGGLRVSVILP 474 R A+ G GLGLAICR II+AH GTI SP GG + LP Sbjct: 846 --RESATPGVGLGLAICRAIIEAHHGTIRGGHSPQGGAAIIFTLP 888 >gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing two-component system [Janthinobacterium sp. Marseille] Length = 480 Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/303 (28%), Positives = 151/303 (49%), Gaps = 9/303 (2%) Query: 175 FQQSQFLAQLIIALVAVMLAAFLVVRISGVLTRPLTRVARATHRLAGGDYAIRVE-VESG 233 F+ + A LI++++A ++ A+ V+ RP+ +V+R + +R++ E Sbjct: 179 FKTILWWATLIVSVIA-LIVAWCAVQWGH---RPIRKVSRDIRAIRSSRLDVRLDPTEVP 234 Query: 234 DEVGMLAQDFNQLAMTLERNEKLRREFMADVSHELRTPLGILNGQLE-ALEDGVLQPDA- 291 E+ LA FN + +E F AD++HELRTP+ L Q E AL + Sbjct: 235 IELAELAASFNDMLGRIEDGFAKLANFSADIAHELRTPVTNLVMQTEVALSQSRSSAEYR 294 Query: 292 QTLRSLKSEVEHLNKLVGDLYDLSLADAGALTYRHADIDLTPLLQDSAATYAERFNQRGM 351 + L S E E +++++ D+ L+ + +DI + ++QD + + + Sbjct: 295 EILYSNLEEFERMSRMISDMLFLAQTENDPHNLHLSDISIAAMIQDLFDYFEALAEEANI 354 Query: 352 SLTTALPAAMLVHADGARLQQLFNNLFENSLRYTDTGGRLQVHAQLQQQQWHLFFDDSEP 411 +LT AA V AD + + +NL N+++Y+ G + VH +Q + ++ Sbjct: 355 TLTLEGNAAP-VKADREMMLRALSNLISNAIQYSAPGSTVIVHLSQDKQVTTVSVENPAG 413 Query: 412 GVPPEVMARLFERFFRVETSRNRASGGAGLGLAICRRIIDAHQGTIGASDSPLGGLRVSV 471 + E + +LF+RFFR + SR R + GAGLGLAI + I +AH GT+ A+ S ++ + Sbjct: 414 QIAREDLPKLFDRFFRTDPSRKRKASGAGLGLAIVKSIAEAHGGTVQAT-SEQAQIKFEI 472 Query: 472 ILP 474 LP Sbjct: 473 TLP 475 >gi|152982747|ref|YP_001353102.1| two-component sensor kinase EnvZ [Janthinobacterium sp. Marseille] Length = 455 Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/304 (27%), Positives = 147/304 (48%), Gaps = 16/304 (5%) Query: 174 RFQQSQFLAQLIIALVAVMLAAFLVVRISGVLTRPLTRVARATHRLAGGDYAIRVEVESG 233 R + S + L V V+L+ + ISG++ +PL R+ AT +A G + Sbjct: 152 RIEGSSGVQWLGWGAVTVLLSLLGALMISGLINQPLARLTAATRAIATGQRPAPLPERGP 211 Query: 234 DEVGMLAQDFNQLAMTLERNEKLRREFMADVSHELRTPLGILNGQLEALEDGVLQPDAQT 293 E+ FNQ+ L R E R +A +SH+LRTPL + QLE +E L DA+ Sbjct: 212 TEIREANHSFNQMVDDLNRVESDRAVVLAGISHDLRTPLARM--QLE-VELAGLPADARA 268 Query: 294 LRSLKSEVEHLNKLVGDLYDLSLADAGALTYRHADIDLTPLLQDSAATYAERFNQRGMSL 353 ++S++E ++ ++G D + + ID+T L+ +A E + + + Sbjct: 269 --GMQSDLEQMDAIIGQFLDYAKPSDSS---HFQPIDMTALMHSAA---QEALRMQDVRI 320 Query: 354 TTALPAAMLVHADGARLQQLFNNLFENSLRYTDTGG----RLQVHAQLQQQQWHLFFDDS 409 + + ++V + ++++ NNL EN+ RY G + + Q + + + D Sbjct: 321 NSKIDDKLVVLGNAIDIKRVVNNLIENARRYGKLPGNDYVEIDLRCQAEGDKVIIEVTDH 380 Query: 410 EPGVPPEVMARLFERFFRVETSRNRASGGAGLGLAICRRIIDAHQGTIGASDSPLGGLRV 469 GVP + RL F R++++R +A+ GAGLGLAI RI+ H G + + GGL + Sbjct: 381 GAGVPEAEIDRLLRPFTRMDSARGQAN-GAGLGLAIVDRIVKRHSGKLQLLNREGGGLVI 439 Query: 470 SVIL 473 + L Sbjct: 440 HITL 443 >gi|152980724|ref|YP_001353975.1| two-component system sensor kinase of the phosphate regulon [Janthinobacterium sp. Marseille] Length = 443 Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 115/228 (50%), Gaps = 13/228 (5%) Query: 251 ERNEKLRREFMADVSHELRTPLGILNGQLE-ALEDGVLQPDAQT--LRSLKSEVEHLNKL 307 +R E +RR+F+A+ SHELRTPL ++NG LE A L PD + L + + + + L Sbjct: 200 DRIEMMRRDFIANASHELRTPLTVINGFLEIAQGQPNLDPDVRMSHLNLMIEQGKRMQNL 259 Query: 308 VGDLYDLSLADAGALTYR--HADID--LTPLLQDSAATYAERFNQRGMSLTTALPAAMLV 363 V D+ L+ ++ R H +I L +LQ++ A R +SLT P + Sbjct: 260 VEDMLTLTRLESIDYPLRPEHVNIGNLLRQILQEAEALSGGR---HVISLTVEGPD---I 313 Query: 364 HADGARLQQLFNNLFENSLRYTDTGGRLQVHAQLQQQQWHLFFDDSEPGVPPEVMARLFE 423 L+ F NL N++RYT GGR+ + Q DS G+ E + RL E Sbjct: 314 QGSTDELRSAFGNLVSNAVRYTPEGGRIDIKWQDAGNGPQFSVKDSGIGIRAEHIVRLTE 373 Query: 424 RFFRVETSRNRASGGAGLGLAICRRIIDAHQGTIGASDSPLGGLRVSV 471 RF+RV+ SR+R + G GLGLAI + ++ H +G P G +V Sbjct: 374 RFYRVDKSRSRETQGTGLGLAIVKHVLLRHGAVLGIESQPDAGSTFTV 421 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.138 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,068,053 Number of extensions: 42610 Number of successful extensions: 235 Number of sequences better than 1.0e-08: 26 Number of HSP's gapped: 187 Number of HSP's successfully gapped: 26 Length of query: 484 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 397 Effective length of database: 899,382 Effective search space: 357054654 Effective search space used: 357054654 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)