BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4479.p (430 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981741|ref|YP_001354626.1| acriflavin resistance lipoprote... 318 5e-88 gi|152980288|ref|YP_001353254.1| multidrug efflux system transme... 173 2e-44 gi|152981697|ref|YP_001353374.1| HlyD family secretion protein [... 131 8e-32 gi|152981819|ref|YP_001351711.1| membrane fusion protein [Janthi... 116 3e-27 gi|152981804|ref|YP_001354023.1| membrane fusion protein [Janthi... 94 1e-20 >gi|152981741|ref|YP_001354626.1| acriflavin resistance lipoprotein A precursor [Janthinobacterium sp. Marseille] Length = 422 Score = 318 bits (814), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 168/361 (46%), Positives = 241/361 (66%), Gaps = 1/361 (0%) Query: 20 RLALSLTMVAVLGACSRSGDQPKSAAQSEVGYVVVKAQRQALTTELPGRTTAYLAADIRP 79 RL+ +L ++ + C DQ + EV V V+ +T ELPGR + A++R Sbjct: 9 RLSAALFLIYAIAGCGAKSDQAAAPPPQEVSVVTVQPGVLGVTNELPGRMESIRVAEVRA 68 Query: 80 QVGGIIQQRLFKEGSLVKAGQPLYQIDPASYQAAYDSAKASLLKSEATLASSKLKAERYA 139 +V GI+ +R+F+EGS VKAG LYQIDPA QA Y+SA A++ + EATLA+++ KA+RY Sbjct: 69 RVPGIVLKRVFREGSDVKAGTLLYQIDPAQLQATYNSADAAVARGEATLATAEQKAKRYK 128 Query: 140 ELNKIDAVAKQDNDDTQSTMRQNQADVEVQKAAVQTAAINLQYTRIVSPISGRIEQSTVT 199 L + +AV+KQ+ DD + +Q AD+ KAA + A ++L Y + SPISGRI ++ VT Sbjct: 129 PLVETNAVSKQEYDDVAAAEKQAIADLASAKAARENARLSLGYASVTSPISGRIGRALVT 188 Query: 200 PGALVTASQTTALTTVQQIDPIYVDVTQSTVDLLRLRRELASGQIRKSGANAAQVKILLE 259 GALV T L VQQIDPIYV++TQS ++L+L+R + G+++ +G AA+V ++ + Sbjct: 189 EGALVGQGDVTPLAIVQQIDPIYVNMTQSANEVLKLKRAMDEGKLKSAGKGAAKVTLVTD 248 Query: 260 DGSTYDHPGKLEFTGLSVDTGTGMITLRAVVPNPDGVLLPGAYVRAVLEEGVDEHALLVP 319 DG Y GKL F+ L+VD +G +TLRA +PNPDG+LLPG YVRA +E+ VDE+A+ VP Sbjct: 249 DGQEYGRAGKLLFSDLTVDESSGSVTLRAEIPNPDGLLLPGMYVRARIEQAVDENAITVP 308 Query: 320 QKAISRDQTGAATALVVGTDGKVQQRVVTVARAVGNNWWISKGLQEGDKLIVDGLQKVRV 379 Q+A+ R G+A +VVG DGKV R V + G W I+ GL+EGD++IV+GLQKV+ Sbjct: 309 QQAVLRTPGGSAV-MVVGADGKVASRPVQTGSSSGTAWIITDGLKEGDQVIVEGLQKVQP 367 Query: 380 G 380 G Sbjct: 368 G 368 >gi|152980288|ref|YP_001353254.1| multidrug efflux system transmembrane protein [Janthinobacterium sp. Marseille] Length = 408 Score = 173 bits (439), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 137/418 (32%), Positives = 222/418 (53%), Gaps = 19/418 (4%) Query: 5 ASTPRHAGRRSSTAVRLALSLTMVAVLGACSRSGDQPKSAAQSEVGYVVVKAQRQALTT- 63 ++TPR + RS+ A+ + + L + A + + ++ ++AA + V V +++T Sbjct: 4 STTPRFS--RSAIAIAVGVLLIVGAATVSLTGRAEKTQAAAPAAVSVTVASVLERSVTEW 61 Query: 64 -ELPGRTTAYLAADIRPQVGGIIQQRLFKEGSLVKAGQPLYQIDPASYQAAYDSAKASLL 122 + GR A +IRP++ G I F++G LVK G L+ IDP Y+A A+A+ Sbjct: 62 DDFSGRVEAVERVEIRPRISGTIDAVHFQDGQLVKKGALLFTIDPRPYKAELARAEAARA 121 Query: 123 KSEATLASSKLKAERYAELNKIDAVAKQDNDDTQSTMRQNQADVEVQKAAVQTAAINLQY 182 ++A LA +K + ER L + AVA+++ D ++ M++ A+++ AAV TA +NLQY Sbjct: 122 GAQARLALAKTELERTKRLLEERAVAQRELDTRENAMQEADANLKATDAAVLTARLNLQY 181 Query: 183 TRIVSPISGRIEQSTVTPGALVTASQTT-ALTTVQQIDPIYVDVTQSTVDLLRLRRELAS 241 T I +P+SGR+ ++ +T G LV T LTTV + P+YV+ +D R + Sbjct: 182 TEITAPVSGRVSRAEITVGNLVATGPTAPTLTTVVSVSPVYVNF---EIDEPTYIRYAGN 238 Query: 242 GQIRKSGANAAQVKILLEDGSTYDHPGKLEFTGLSVDTGTGMITLRAVVPNPDGVLLPGA 301 G + SG + V I L Y G ++ +DTG+G I +RAV N DG L PG Sbjct: 239 GTVGNSGVSKIPVSIGLTSEEGYPRTGNVKSFDNRLDTGSGTIRVRAVFNNEDGTLTPGM 298 Query: 302 YVRAVLEEGVDEHALLVPQKAISRDQTGAATALVVGTDGKVQQRVVTVARAVGNNWWISK 361 Y R + ++ALL+ KA+ DQ +VV D KV R V++ V + Sbjct: 299 YARVRTGDANAKNALLIDDKAVGTDQ-DKKYVMVVSADNKVTYRPVSLGPIVDGLRIVRS 357 Query: 362 GLQEGDKLIVDGLQKVRVGDSPRAIDVTDSLQKDLAREAAAAAADPSLGGDAGKAAAA 419 GLQ+ ++++V+GLQ++R D+ VT + K AR A+A P AG+AA++ Sbjct: 358 GLQKDERIVVNGLQRIRPNDT-----VTPEVVKMDARVASANTVKP-----AGQAASS 405 >gi|152981697|ref|YP_001353374.1| HlyD family secretion protein [Janthinobacterium sp. Marseille] Length = 457 Score = 131 bits (329), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 100/331 (30%), Positives = 164/331 (49%), Gaps = 12/331 (3%) Query: 53 VVKAQRQAL--TTELPGRTTAYLAADIRPQVGGIIQQRLFKEGSLVKAGQPLYQIDPASY 110 V +A+RQ + T G A A +R QV G++QQ FKEG V+AGQ L QIDP ++ Sbjct: 73 VQEARRQDIRVTVNAIGSINAANTAVVRVQVSGVLQQINFKEGQQVQAGQLLAQIDPRAF 132 Query: 111 QAAYDSAKASLLKSEATLASSKLKAERYAELNKIDAVAKQDNDDTQSTMRQNQADVEVQK 170 QA A+ L + +A L ++++ RY +L DA+ KQ D ++ +RQ + V+ + Sbjct: 133 QATLGQAEGVLARDKAQLDNARIDLARYKDLLSKDAIPKQQLDTQEALVRQLEGTVKSDQ 192 Query: 171 AAVQTAAINLQYTRIVSPISGRIEQSTVTPGALVTASQTTALTTVQQIDPIYVDVTQSTV 230 V +A + L YTR+ +PI+GR+ G +V + T + + Q PI + + + Sbjct: 193 GTVDSAKLQLSYTRVTAPIAGRVGLKQSDLGNVVQPADTNGVVIITQTRPIALVFSVPSA 252 Query: 231 DLLRLRRELASGQIRKSGANAAQVKILLEDGSTYDHPGKLEFTGLSVDTGTGMITLRAVV 290 ++ + L + + V+ G T G++ ++D T I ++A+ Sbjct: 253 NVPAITARLRANE-------TVAVEAWDRTGKTKLATGQVATVDNAIDVTTDTIKVKALF 305 Query: 291 PNPDGVLLPGAYVRAVLEEGVDEHALLVPQKAISRDQTGAATALVVGTDGKVQQRVVTVA 350 PN D L P V V++ + + L VPQ A+ R G VV D V RVV Sbjct: 306 PNLDDALFPNQAVSVVMQLNLLKDVLTVPQAAVLRGSQG-FYVYVVNADSTVSTRVVKPG 364 Query: 351 RAVGNNWW-ISKGLQEGDKLIVDGLQKVRVG 380 A+ + W I L+ G+K+++DG ++R G Sbjct: 365 -AIDSGWMAIEAKLEAGEKVVIDGTDRLREG 394 >gi|152981819|ref|YP_001351711.1| membrane fusion protein [Janthinobacterium sp. Marseille] Length = 416 Score = 116 bits (290), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 112/377 (29%), Positives = 177/377 (46%), Gaps = 30/377 (7%) Query: 20 RLALSLTMVAVLGAC-------SRSGDQPKSAAQSEVGYVVVKAQRQALTTE---LPGRT 69 + AL + V ++GA +++ + + + Q YV V + R + T LPG Sbjct: 34 KFALIVVGVLLIGAAIVIGLRFAKATELAEVSKQQATRYVSVTSPRSSATDNVLRLPGTL 93 Query: 70 TAYLAADIRPQVGGIIQQRLFKEGSLVKAGQPLYQIDPASYQAAYDSAKASLLKSEATLA 129 + A I + G + + + G VK G L ID + AKA+ ++ L Sbjct: 94 QGIIEAPINARTNGYVTRWVKDIGDPVKRGDLLAVIDTPEVAQQLNEAKATQAQATTNLQ 153 Query: 130 SSKLKAERYAELNKIDAVAKQDNDDTQSTMRQNQADVEVQKAAVQTAAINLQYTRIVSPI 189 +K ER+ L K DAV++QD D+ ++ + A KA VQ L Y+RIV+P Sbjct: 154 LAKSTFERWDALRKRDAVSQQDLDEKRNALAVAVAADNSSKATVQRLQDQLGYSRIVAPF 213 Query: 190 SGRIEQSTVTPGALV-TASQTTALTTVQQIDP--IYVDVTQSTVDLLRLRRELASGQIRK 246 G + + + G LV + T L T+ + DP +YV V QS S QI+ Sbjct: 214 DGIVTRRNIDIGTLVDSGGSTRVLFTLAKSDPLRVYVYVPQSY-----------STQIK- 261 Query: 247 SGANAAQVKILLEDGSTYDHPGKLEFTGLSVDTGTGMITLRAVVPNPDGVLLPGAYVR-A 305 N + + G +D GK+ T ++DT T + + +PNPDGVLLPGAY + A Sbjct: 262 -AGNTVGITLNEIPGKVFD--GKIARTAGAIDTVTRTLQVAIDLPNPDGVLLPGAYAQVA 318 Query: 306 VLEEGVDEHALLVPQKAISRDQTGAATALVVGTDGKVQQRVVTVARAVGNNWWISKGLQE 365 + G +L +P + G A VVG DGKV+ + V +AR +G + ++ G+ Sbjct: 319 IKASGGSASSLTIPNNTLLFRPEGPRVA-VVGDDGKVRLQPVVIARELGVDIELASGVTA 377 Query: 366 GDKLIVDGLQKVRVGDS 382 DKLI++ + GD+ Sbjct: 378 QDKLIINPADSLSNGDA 394 >gi|152981804|ref|YP_001354023.1| membrane fusion protein [Janthinobacterium sp. Marseille] Length = 377 Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 105/368 (28%), Positives = 163/368 (44%), Gaps = 52/368 (14%) Query: 36 RSGDQPKSAAQSEVGYVVVKAQRQALTTELPGRTTAYLAADIRPQVGGIIQQRLFKEGSL 95 RSGD +S V V+ + +T G TA D+RP+V I++ KEG Sbjct: 33 RSGDGTQS-----VKTVIATQKTIPITVNANGYVTAVSTVDVRPKVQNIVRTIHVKEGQF 87 Query: 96 VKAGQPLYQIDPASYQA-------------AYDSAKASLLKSEATLASSKLKAERYAEL- 141 VKAGQ L+ +D S Q+ A + +LK L + ++ + Sbjct: 88 VKAGQLLFTLDERSDQSNVAKASAELAAAQAELADAEQILKRNQDLLAKNFVSQAVVDTA 147 Query: 142 -NKIDAVAKQDNDDTQSTMRQNQADVEVQKAAVQTAAINLQYTRIVSPISGRIEQSTVTP 200 NK+DA+ ++T R NQ AA+Q++++ L +I + ISGRI V P Sbjct: 148 RNKVDAL--------RNTTRANQ-------AAIQSSSVALSDNQIKAGISGRIGVINVHP 192 Query: 201 GALVTASQTTALTTVQQIDPIYVDVTQSTVDLLRLRRELASGQIRKSGANAAQVKILLED 260 G+L + T +T V QIDPI + T +L +R G A V L Sbjct: 193 GSLAQPTGTVMVTIV-QIDPIMISFTLPERELANIRATYPQGN--------APVHAQLPG 243 Query: 261 GSTYDHPGKLEFTGLSVDTGTGMITLRAVVPNPDGVLLPGAYVRAVLEEGVDEHALLVPQ 320 GKL F DT +G I ++A N + L PG+Y+ + A+LVP Sbjct: 244 QEVLT--GKLTFIDNLADTQSGTIRMKAEFANAEQKLWPGSYINVSMVSREVPDAVLVPA 301 Query: 321 KAISRDQTGAATAL--VVGTDGKVQQRVVTVARAVGNNWWISKGLQEGDKLIVDGLQKVR 378 +A+ TG L VV D V++ ++V G +S G++ G +++V+G + +R Sbjct: 302 QAVV---TGPVDKLVYVVQPDDTVKEEKISVLAIEGGQAAVS-GVKAGSRVVVEGTKNLR 357 Query: 379 VGDSPRAI 386 G R + Sbjct: 358 PGTKIREV 365 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.312 0.127 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 843,577 Number of extensions: 33238 Number of successful extensions: 140 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 124 Number of HSP's successfully gapped: 12 Length of query: 430 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 344 Effective length of database: 903,079 Effective search space: 310659176 Effective search space used: 310659176 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)