BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4477.p (493 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152983076|ref|YP_001352716.1| outer membrane protein [Janthin... 388 e-109 gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthi... 387 e-108 gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-li... 192 3e-50 gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux prot... 177 1e-45 gi|152980931|ref|YP_001355168.1| outer membrane efflux protein [... 176 2e-45 >gi|152983076|ref|YP_001352716.1| outer membrane protein [Janthinobacterium sp. Marseille] Length = 476 Score = 388 bits (996), Expect = e-109, Method: Compositional matrix adjust. Identities = 221/469 (47%), Positives = 295/469 (62%), Gaps = 15/469 (3%) Query: 21 LTAALAGCANLEPDYARPVAPVPASWTQQIDGKTVVSATGKVGQSDADQLGWRQFFLDPR 80 L++ L GC+ L P Y RP PV +W Q ++ A ++ W++FF+D Sbjct: 18 LSSILVGCS-LAPVYERPDLPVSKTWPDQ-----RLANERNSPDVTASEIDWKEFFIDQN 71 Query: 81 LQQVIAAALENNRDLRVAVLNIEKARAQYRITDADRYPSISATGSSSASRTPAELSSTGL 140 L QVI AL NNRDLRVA LNI++ARA Y + ADR PS+ S + RTPA+L+ G Sbjct: 72 LSQVIQIALNNNRDLRVAALNIDRARALYGVQGADRLPSVGVGTSGARQRTPADLNDKGF 131 Query: 141 ATVSHQQSLTVGMSAYELDFFGRLKNLSDAALETYQYQVETRRSTHISLVAEVATAWLTL 200 + V+ S +G++++ELDFFGR+KNLS AALE Y E RRS I+L++EVA + L Sbjct: 132 SDVTSTYSAGIGITSFELDFFGRIKNLSQAALERYIATDEARRSAQIALISEVAMRYQAL 191 Query: 201 ASDRDLLKLAQDTYTSQSRTYELTQRSHDIGTVSGVDLASLEATVEAARADVASYTSQVA 260 A+D L +LA +T +++ ++ Q + G S +DL E+ +EAAR +A T Q A Sbjct: 192 AADHRLWQLANNTLSTRLDSHARQQSLLEQGASSELDLRQSESLLEAARVALAQQTRQRA 251 Query: 261 QDINALRLLVGADVDAALLPTGLPDT-ASVLPATPAGLPSQVLLRRPDVLAAEHTLKSAN 319 D NALRLLVGA +D +LLP+G+ D ++L P GLPS ++ RPD+ E L+S N Sbjct: 252 VDQNALRLLVGATIDPSLLPSGMSDALPAMLADIPVGLPSDLISTRPDIRQHEAILRSEN 311 Query: 320 ADIGAARAAFFPSITLTADGGTASRTLGGLFKPGSGSWSFAPSINLPIFNSGSLRASLDS 379 A IGAARAAFFP I+LT GT+S L GLF+ GS SWSF P ++LPIF+ G RA+L+ Sbjct: 312 ASIGAARAAFFPRISLTGSLGTSSSELSGLFEAGSRSWSFLPQVSLPIFDVGRNRANLNV 371 Query: 380 AKITRDIDVANYEKAIQTAFSEVADALAVRATLDQRLDAQGKATAASEKAFR----LSEA 435 AK RDI +A YEK+IQ AF EVADALA TL + L +A+ A E+A R LS+ Sbjct: 372 AKADRDIAIAEYEKSIQIAFREVADALAGTDTLKEEL----RASTAQERAERVRYVLSKQ 427 Query: 436 RYKNGIDSYLTTLVAQRTLYSAQQTLISLRLTEQSNRITLYKVLGGGWN 484 RY++G SYL L AQR+L++ QQ I L E N+I LYK LGGGW Sbjct: 428 RYESGYASYLEFLDAQRSLFAIQQKTIVTELAEMQNKIGLYKALGGGWK 476 >gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthinobacterium sp. Marseille] Length = 481 Score = 387 bits (993), Expect = e-108, Method: Compositional matrix adjust. Identities = 220/471 (46%), Positives = 303/471 (64%), Gaps = 12/471 (2%) Query: 17 MILALTAA--LAGCANLEPDYARPVAPVPASWTQQIDGKTVVSATGKVGQSDADQLGWRQ 74 + LAL AA L+ C+ + P Y RP APV A + V + Q A +GWR Sbjct: 4 ITLALLAAGVLSACS-MAPKYVRPDAPVAADYG--------VPSKADNNQVRAVDIGWRN 54 Query: 75 FFLDPRLQQVIAAALENNRDLRVAVLNIEKARAQYRITDADRYPSISATGSSSASRTPAE 134 FF DPRLQ +I A+ NNRDLRVA L IE+ARA Y I AD P+++ + S +R PA Sbjct: 55 FFTDPRLQVLIGNAIANNRDLRVAALRIEEARALYNIQSADLLPTLNVNATGSRARVPAS 114 Query: 135 LSSTGLATVSHQQSLTVGMSAYELDFFGRLKNLSDAALETYQYQVETRRSTHISLVAEVA 194 +S+TG + VS + +G++A+ELDFFGR+++LSDAAL Y E +R+ ISLV+EVA Sbjct: 115 ISNTGSSVVSSNYQVGLGLAAFELDFFGRVRSLSDAALAAYLSTEEAQRAAQISLVSEVA 174 Query: 195 TAWLTLASDRDLLKLAQDTYTSQSRTYELTQRSHDIGTVSGVDLASLEATVEAARADVAS 254 A+L+ S + LA+ TY S+ Y+L+++ ++G S +DL + EA ++ ARA Sbjct: 175 KAYLSERSFAEQQDLARQTYESRVEAYKLSKQRFEVGASSALDLRNDEALLQTARAAELL 234 Query: 255 YTSQVAQDINALRLLVGADVDAALLPTGLPDTASVLPATPAGLPSQVLLRRPDVLAAEHT 314 Q AQ +NAL LLVG + L P + ++L PAGLPS +L +RPD+ +AE T Sbjct: 235 AQRQRAQAMNALTLLVGQPL-TDLPPAQALSSQTILTDIPAGLPSDLLTQRPDIRSAEQT 293 Query: 315 LKSANADIGAARAAFFPSITLTADGGTASRTLGGLFKPGSGSWSFAPSINLPIFNSGSLR 374 L SANA+IGAARAAFFP I+LTA GT+S L GLF+ GS SWSFAP + LPIF++G R Sbjct: 294 LLSANANIGAARAAFFPRISLTAGLGTSSNELAGLFEGGSRSWSFAPQLVLPIFDAGRNR 353 Query: 375 ASLDSAKITRDIDVANYEKAIQTAFSEVADALAVRATLDQRLDAQGKATAASEKAFRLSE 434 +L+ A++ +DI VANYEK+IQ AF EV+DAL R LDQ+++AQ A + F+ + Sbjct: 354 GNLNLAEVRKDIAVANYEKSIQVAFREVSDALVARDLLDQQVEAQRLVQEAQAERFKFAT 413 Query: 435 ARYKNGIDSYLTTLVAQRTLYSAQQTLISLRLTEQSNRITLYKVLGGGWNE 485 R++NGI S L L AQR L++AQ +L+ +RLT +N + LY+ LGGG E Sbjct: 414 QRFQNGIASSLDVLDAQRELFTAQLSLVQVRLTRLTNAVDLYRSLGGGLVE 464 >gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 475 Score = 192 bits (489), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 149/476 (31%), Positives = 234/476 (49%), Gaps = 14/476 (2%) Query: 13 PRTAMILALTAALAGCANLEPDYARPVAPVPASWTQQIDGKTVVSATGKVGQSDADQLGW 72 P A +LAL L GCA + PDY RP APV +W + + G++ + W Sbjct: 7 PAFASLLALLI-LGGCA-VGPDYQRPDAPVAQAWKTEAGWQASNPRDGEL------KGAW 58 Query: 73 RQFFLDPRLQQVIAAALENNRDLRVAVLNIEKARAQYRITDADRYPSISATGSSSASRTP 132 + F D L + AL+N + + +A +++ARAQ + ++ +P I A S+ +RT Sbjct: 59 WEIFRDAELNALQEQALKNGQTMVIAQARVDQARAQANVANSSFFPKIGAQAGSARNRTS 118 Query: 133 AELSSTGLATVSH---QQSLTVGMS-AYELDFFGRLKNLSDAALETYQYQVETRRSTHIS 188 AE T + + Q + +YELD FGR++ ++ A T Q +T + Sbjct: 119 AERPLTNYNSQNSSVVQNDFNAAFTVSYELDLFGRVRRQAEGAGATAQQAQADFENTRLV 178 Query: 189 LVAEVATAWLTLASDRDLLKLAQDTYTSQSRTYELTQRSHDIGTVSGVDLASLEATVEAA 248 L AE+A +L L + + Q T +Q++ + H++G SG+DL + A Sbjct: 179 LTAELAADYLVLRQTDAEIDVLQQTLGAQTKALDFISARHELGAASGLDLNQQQGLTAAT 238 Query: 249 RADVASYTSQVAQDINALRLLVGADVDAALLPTGLPDTASVLPATPAGLPSQVLLRRPDV 308 + + Q A+ NA+ LVG LP L T + PA P P+ +L RRPD+ Sbjct: 239 QTQLTLLQDQRARYQNAIATLVGVPAPDFKLPVNLAVTTA--PAIPLTAPAALLERRPDI 296 Query: 309 LAAEHTLKSANADIGAARAAFFPSITLTADGGTASRTLGGLFKPGSGSWSFAPSINLPIF 368 AAE + +ANA IG AR+A+FPS+ L+ G+ + L LF + WS S IF Sbjct: 297 AAAERAMAAANAQIGVARSAYFPSLGLSGLYGSDANQLSNLFSAPALLWSIGVSATQMIF 356 Query: 369 NSGSLRASLDSAKITRDIDVANYEKAIQTAFSEVADALAVRATLDQRLDAQGKATAASEK 428 + G A++D AK + NY +++ A EV D L L Q L + A ++++ Sbjct: 357 DGGRTSANVDFAKAGYQQALGNYRQSVLVAMQEVQDGLNSDVALAQALTSAKVAADSADR 416 Query: 429 AFRLSEARYKNGIDSYLTTLVAQRTLYSAQQTLISLRLTEQSNRITLYKVLGGGWN 484 + LS RY++GI + L +VAQ+T S ++ + L N + L K LGGGW+ Sbjct: 417 SLGLSTDRYQSGITTNLEVVVAQQTFLSYKRQEVQLHGQRLVNTVKLIKALGGGWH 472 >gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux protein [Janthinobacterium sp. Marseille] Length = 485 Score = 177 bits (449), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 148/481 (30%), Positives = 239/481 (49%), Gaps = 29/481 (6%) Query: 15 TAMILALTAALAGCANLEPDYARPVAPVPASWTQQ-------IDGKTVVSATGKVGQSDA 67 + M+ AL LAGC+ P + +P ++ +Q +DG ++A + Sbjct: 9 STMVAALV--LAGCSTARPPEELKL-DLPNAYREQSTVKANELDGAWKLAAPA----DNK 61 Query: 68 DQLGWRQFFLDPRLQQVIAAALENNRDLRVAVLNIEKARAQYRITDADRYPSISATGSSS 127 D+ W + F D +L +I A +N +L +A+ ++ ARA + DADR + A Sbjct: 62 DRGAWWKVFGDEQLSNLIVEAGNSNLNLAIALARVKDARAIAGVVDADRGVQVDA----- 116 Query: 128 ASRTPAELSSTGLATVSHQQSLTVGMSAYELDFFGRLKNLSDAALETYQYQVETRRSTHI 187 P + A+ ++ L+ AYE+D FGRL + S AA + Q RS + Sbjct: 117 -GVGPTRSGNAQGASTQYRAPLSF---AYEVDLFGRLSDASRAARLDAEGQEAAYRSVLL 172 Query: 188 SLVAEVATAWLTLASDRDLLKLAQDTYTSQSRTYELTQRSHDIGTVSGVDLASLEATVEA 247 +L ++VA + T+ S + + + T + +LTQR D G S +D+A + Sbjct: 173 ALQSDVAQQYFTIRSLDSEVDVLEKTVALRQEALDLTQRRFDAGDTSELDVAQAKTEWAT 232 Query: 248 ARADVASYTSQVAQDINALRLLVGADVDAALLPTGLPDTASVLPATPAGLPSQVLLRRPD 307 A++ Q AQ +AL +L+G LP P A+V+ P+GLPS +L RRPD Sbjct: 233 TSAELEGVKRQRAQRDHALAILLGKAPAEFTLPVA-PLAAAVV-TVPSGLPSDLLERRPD 290 Query: 308 VLAAEHTLKSANADIGAARAAFFPSITLTADGGTASRTLGGLFKPGSGSWSFAPSI---- 363 + A+ L +++A IGAA+AAFFP + LT G S L LFK S SW P + Sbjct: 291 IAQAQRQLAASSARIGAAKAAFFPKLLLTGSAGYESNELRDLFKWSSRSWMLGPVVGTIL 350 Query: 364 NLPIFNSGSLRASLDSAKITRDIDVANYEKAIQTAFSEVADALAVRATLDQRLDAQGKAT 423 ++P+F+ G +++L A + VANY + F +V D L+ TLD++L + +A Sbjct: 351 SMPLFDGGRNQSNLARADANYEALVANYRLQVLVGFQDVEDNLSALRTLDRQLQFEEQAV 410 Query: 424 AASEKAFRLSEARYKNGIDSYLTTLVAQRTLYSAQQTLISLRLTEQSNRITLYKVLGGGW 483 +++ A RL++ RY+ G SY + AQR+ S+Q++ I + L + LGGGW Sbjct: 411 NSAQLASRLADTRYRYGSASYFEVIDAQRSSLSSQRSKIRSTGQRAVASVGLIRALGGGW 470 Query: 484 N 484 Sbjct: 471 E 471 >gi|152980931|ref|YP_001355168.1| outer membrane efflux protein [Janthinobacterium sp. Marseille] Length = 473 Score = 176 bits (447), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 146/461 (31%), Positives = 223/461 (48%), Gaps = 17/461 (3%) Query: 25 LAGCANLEPDYARPVAPVPASWTQQIDGKTVVSATGKVGQSDADQLGWRQFFLDPRLQQV 84 LAGCA + V V W Q + V ATG D W + F L + Sbjct: 13 LAGCAT-QATQQTLVPEVAPQWRQP---QANVDATGTTSVLTRD---WWRSFGSSELDSL 65 Query: 85 IAAALENNRDLRVAVLNIEKARAQYRITDADRYPSISAT-GSSSASRTPAELSSTGLATV 143 + + D+ AV + +A+A I A P ++ G++ R + + T TV Sbjct: 66 LETVQVQSYDIAAAVARVTQAQATATIAGAALLPELNGNFGATRNGRLGGDGNGTATGTV 125 Query: 144 SHQQSLTVGMSA-YELDFFGRLKNLSDAALETYQYQVETRRSTHISLVAEVATAWLTLAS 202 G+SA YELDF+GR + + D+A + R + H+++ A VA++WL Sbjct: 126 YQ-----AGLSATYELDFWGRNRAVRDSARAGLRAAEFDRDTVHLTVTAGVASSWLQTVG 180 Query: 203 DRDLLKLAQDTYTSQSRTYELTQRSHDIGTVSGVDLASLEATVEAARADVASYTSQVAQD 262 R+ + +A + S R ++ + G + ++LA + A A+ Q Sbjct: 181 LRERVAIADLSVASAQRLLDVIESRARAGAANPLELAQQRGVLAAQMRARAAIRQQAEDS 240 Query: 263 INALRLLVGADVDAALLPTGLPDTASVLPATPAGLPSQVLLRRPDVLAAEHTLKSANADI 322 + L +L+G + + L+ G PA AGLP+ +L+RRPD+ AE L A+A+I Sbjct: 241 LTTLAVLLGRN-PSLLVLAGTELNKLQAPAVVAGLPADLLVRRPDIARAEAQLSGADANI 299 Query: 323 GAARAAFFPSITLTADGGTASRTLGGLFKPGSGSWSFAPSINLPIFNSGSLRASLDSAKI 382 AARAA P I+L D S + +F + +S A + PIFN+G L A D A Sbjct: 300 IAARAAMLPRISLGGDITAGSNRVSSVFD--NPVYSLAAGLAAPIFNAGRLAAGRDLALA 357 Query: 383 TRDIDVANYEKAIQTAFSEVADALAVRATLDQRLDAQGKATAASEKAFRLSEARYKNGID 442 R+ +ANY +AI AF +V AL A +D + AQ + +++AF L+E+RY+ G + Sbjct: 358 QREELLANYRRAIVAAFGDVEVALNAVAGIDAQRIAQEEELRQAQRAFNLAESRYRAGAE 417 Query: 443 SYLTTLVAQRTLYSAQQTLISLRLTEQSNRITLYKVLGGGW 483 + LT L AQRTLY+AQ LR ++LYK LGGGW Sbjct: 418 TSLTLLDAQRTLYAAQDAAAQLRTLRLQAAVSLYKALGGGW 458 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.127 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 996,128 Number of extensions: 37538 Number of successful extensions: 183 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 153 Number of HSP's successfully gapped: 12 Length of query: 493 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 406 Effective length of database: 899,382 Effective search space: 365149092 Effective search space used: 365149092 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)