BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4470.p
         (244 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980741|ref|YP_001353195.1| GntR family transcriptional reg...   140   6e-35
gi|152981522|ref|YP_001352980.1| GntR family transcriptional reg...   129   2e-31

>gi|152980741|ref|YP_001353195.1| GntR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 284

 Score =  140 bits (354), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 125/233 (53%)

Query: 12  PLYLQLRDQLAAQIRAQKWQPGQAIPSEAELSQTFQVAVGTVRRAIETLMSEGLVERTHG 71
           PLY Q++  +   +++ +W+PG+ IPSE EL+  F+V+ GTVR+AI+ L +E LV R  G
Sbjct: 52  PLYQQIKALITRSLQSGEWRPGELIPSEVELATRFKVSQGTVRKAIDELSAENLVVRRQG 111

Query: 72  RGTFVRRARFDNSLFRFFRFEAADGRPLAPKSVIVSRKIIEAPRQVAEALHLKPHGKVIE 131
           +GTFV       + FRF R +   G PL P + I+  K + AP  +A  L +K    V+ 
Sbjct: 112 KGTFVATHHEARAQFRFLRLKPDVGEPLYPDNTIIDAKRLRAPADIARQLDIKTGDSVVF 171

Query: 132 LLRLRTVDGQPVLAENIYLCAQRFKALADKAPEQFGDLLYPLYERECGLIVASARETLTV 191
           L R+++ DG P + E ++L    FK L+ +   Q+   +Y L E E G  +  A E +  
Sbjct: 172 LKRVQSFDGAPTILEELWLPGTIFKGLSVERVLQYKGPMYALLETEFGTQMIRAVENIKA 231

Query: 192 ETVTAAQARLLGLKEKTPVVVIERIAFGSDGQPLEWRQSRGAGSKFRYSAEIR 244
                  A LL L   TP++ + R++F    +P+E R+S    +   Y  E+ 
Sbjct: 232 VVADQVTADLLSLPLNTPLLSVTRVSFTYGDKPVEVRRSYYVTNNHHYRNELN 284


>gi|152981522|ref|YP_001352980.1| GntR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 245

 Score =  129 bits (323), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 120/227 (52%)

Query: 13  LYLQLRDQLAAQIRAQKWQPGQAIPSEAELSQTFQVAVGTVRRAIETLMSEGLVERTHGR 72
           LY +++ Q+ A + + +W  G AIPSE +L Q F V++GT+R+AI+ L++E ++ R  GR
Sbjct: 14  LYKEVKRQMLASLASSEWTSGDAIPSEKQLCQRFGVSIGTLRKAIDELVAENILIRHQGR 73

Query: 73  GTFVRRARFDNSLFRFFRFEAADGRPLAPKSVIVSRKIIEAPRQVAEALHLKPHGKVIEL 132
           GTFV        LFRFF     DG+   P+  + S     A    AE L +    KV + 
Sbjct: 74  GTFVAVHNRGPHLFRFFNVVRHDGQKSYPQLTLNSFVKTSADELAAEKLGIAVGSKVFQF 133

Query: 133 LRLRTVDGQPVLAENIYLCAQRFKALADKAPEQFGDLLYPLYERECGLIVASARETLTVE 192
           + +R+++ + VL + I L  + F  + +    +    LY LY+   G+ V    E +   
Sbjct: 134 VNVRSLNDEAVLVDEITLPEELFPGMTEAQLRERPSTLYNLYQVSYGINVIRIEERVRAS 193

Query: 193 TVTAAQARLLGLKEKTPVVVIERIAFGSDGQPLEWRQSRGAGSKFRY 239
             +AA A+LL +    P++ I R+AF  + QP+E+R S     ++ Y
Sbjct: 194 LASAAHAKLLNIATGAPLLKIYRVAFSYNNQPIEFRTSYVNTERYEY 240


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 547,433
Number of extensions: 20929
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 2
Length of query: 244
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 163
Effective length of database: 921,564
Effective search space: 150214932
Effective search space used: 150214932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)