BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4469.p (413 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982698|ref|YP_001352731.1| major facilitator transporter [... 123 2e-29 gi|152980838|ref|YP_001354006.1| major facilitator transporter [... 110 2e-25 gi|152980800|ref|YP_001354171.1| major facilitator superfamily s... 62 8e-11 gi|152982554|ref|YP_001355030.1| major facilitator superfamily m... 59 6e-10 >gi|152982698|ref|YP_001352731.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 460 Score = 123 bits (309), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 117/443 (26%), Positives = 206/443 (46%), Gaps = 48/443 (10%) Query: 8 VTAKERKTFWACFSGWALDALDVQMFSLAIPALIAAFSLSKADAGMISGATLVASAIGGW 67 +T +R F + W D++D+ + + + ++ A F+L+ AG+++ ++ + +G Sbjct: 22 MTRYQRSLFGIIATAWFFDSMDLGIMTFVLGSIKAEFALTTTQAGLLASSSFLGMFLGAA 81 Query: 68 FAGALSDRYGRVKTLQITIIWFSLFTFLSAFAQSYPQLLILKALQGFGFGGEWAAGAVLM 127 AG L+D++GR Q ++I++ + FA L++ + + GFG G E+ G ++ Sbjct: 82 IAGMLADKFGRKPVFQWSMIFWGAGSLACGFATDVTWLMVFRVVLGFGMGMEFPIGLSMV 141 Query: 128 AETIRAEHRGKAMGSVQSAWAVGWGGAVLLFSVLFTMLPQEMAWRVMFVIGLLPALLVVY 187 +E + A+ RGK + ++ W +G+ A +L + LP + WR +F+ +PA+ V Sbjct: 142 SEIVPAKSRGKYVAILEGFWPLGFIAAGIL---AYLTLPL-IGWRGIFIALSIPAVFVFI 197 Query: 188 VRRSVPETEAFLA--GQKAAAGKPATSTLLGIFR-----------PDVLRLTIIGSLLGV 234 VRR VPE+ +L G+ A A T + + P + + + Sbjct: 198 VRRYVPESPRWLEEVGRDAEADAVTTKIEKNVIKANGGKPLPTPAPPINEMPKKQDKRAL 257 Query: 235 GA---HG------------------GYYALMTWLPTYLKTEKHLSVLSTGGYLAVIIVAF 273 A HG GYY L TWL L+ + V + Y I +A Sbjct: 258 FAELWHGVYAKRTVMLWALWFFALLGYYGLTTWLGALLQQAGY-EVTKSVMYTVYISLAG 316 Query: 274 WCGCIVSAQLLDRIGRRRTVAFFAL--CCVATVLCYIFLPLSDT-QMLVCGFPLGFFAAG 330 G I SA LL++ GR+ T + C A V + + Q++ G + FF G Sbjct: 317 IPGFIFSAWLLEKWGRKPTCVLMLVGSACAAYVYGQVATAQAPVAQLIGAGLCMQFFLFG 376 Query: 331 IPASLGALFNELYPSGIRGTGVGFCYNFGRVASAGFPVLVGHMSDSMPLGQAIGIDA--A 388 + + L A ELYP+ R TG GF + GR+ S P VG + +P+ G+ A Sbjct: 377 MWSVLYAYTPELYPTRSRATGSGFASSIGRLGSLLGPFAVGVI---LPMTGHTGVFTLGA 433 Query: 389 IAYSLVVIAVLML-PETRGRKME 410 I++ + + V+++ ET+GR +E Sbjct: 434 ISFGIAALVVIVMGTETKGRSLE 456 >gi|152980838|ref|YP_001354006.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 462 Score = 110 bits (274), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 119/430 (27%), Positives = 195/430 (45%), Gaps = 61/430 (14%) Query: 26 DALDVQMFSLAIPALIAAFSLSKADAGMISGATLVASAIGGWFAGALSDRYGRVKTLQIT 85 D LD+ M + + ++ F L+ A AGM+ A+ V A+G +G L+D++GR QI+ Sbjct: 40 DNLDLAMMAYLLGSIKTEFGLTTAQAGMLGSASFVGMALGAVSSGMLADKFGRKPIFQIS 99 Query: 86 IIWFSLFTFLSAFAQSYPQLLILKALQGFGFGGEWAAGAVLMAETIRAEHRGKAMGSVQS 145 +I + + ++L + A L I + L G G G E L++E I A+ RGK + + Sbjct: 100 MIIWGVASYLCSTANDPVSLAIYRVLLGIGMGMELPLAQTLLSEFIPAKRRGKYLALMDG 159 Query: 146 AWAVGWGGAVLL-FSVLFTMLPQEMAWRVMFVIGLLPALLVVYVRRSVPETEAFL--AGQ 202 W + + A L+ + VL +WR MF++G +PA+ + +RR VPE+ +L G+ Sbjct: 160 NWPIAFICAGLMSYYVL-----ASYSWRTMFLLGAIPAVFLFVIRRYVPESPRWLESKGR 214 Query: 203 KAAAGK-------------------PATSTLL-------GI---FRPDVLRLTIIGSLLG 233 A A P T + GI + P R T+ L Sbjct: 215 HAEASNIVDGIEGEVKKILKVDSLPPIVQTAMMRDQEAFGIKVLWSPVYRRRTLTVWGLW 274 Query: 234 VGAHGGYYALMTWLPTYLKTEKHLSVLSTGGYLAVIIVAFWCGCIVSAQLLDRIGRRRTV 293 A G+Y L TW+ L+ + L V + Y I G + +A +++R GR+ Sbjct: 275 FFALLGFYGLNTWIGALLQ-QSGLEVTKSVLYTVYIACGGIPGFLWAAWVVERWGRKP-- 331 Query: 294 AFFALCCVAT-----VLCYIFLPLSDT-----QMLVCGFPLGFFAAGIPASLGALFNELY 343 CV+T V+ +I+ ++ + ++ G + FF G+ A L ELY Sbjct: 332 -----ACVSTLLGGAVMVFIYGWVASSAHTFIALVSAGAMMQFFMFGMWAVLYTYTPELY 386 Query: 344 PSGIRGTGVGFCYNFGRVASAGFPVLVGHMSDSMPLGQAIGIDAAIAYSLVVIAVLMLP- 402 P+ R +G G GR+ S P +VG + +PL IG+ A V+ A ++ Sbjct: 387 PTRARASGCGMASTVGRLGSLLGPTIVGVI---LPLVGQIGVFTVGASCFVIAAFIVYRF 443 Query: 403 --ETRGRKME 410 ETRG +E Sbjct: 444 GIETRGLSLE 453 >gi|152980800|ref|YP_001354171.1| major facilitator superfamily sugar transporter [Janthinobacterium sp. Marseille] Length = 544 Score = 61.6 bits (148), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 71/256 (27%), Positives = 104/256 (40%), Gaps = 36/256 (14%) Query: 59 LVASAIGGWFAGALSDRYGRVKTLQITIIWFSLFTFLSAFAQSYP--------QLLILKA 110 V IG G L DR GR T +TII T L F SY L++L+ Sbjct: 72 FVIRPIGAVLFGYLGDRLGRKHTFLLTIIMMGGSTALIGFLPSYASVGHAAWISLVVLRL 131 Query: 111 LQGFGFGGEWAAGAVLMAETIRAEHRGKAMGSVQSAWAVGWGGAVLLFS---VLFTMLPQ 167 +QG GGE+ + +AE R RG G +Q ++G L+ S +L T Sbjct: 132 VQGLAVGGEYGGAVIYVAEHSRPSRRGLLTGWIQITSSMG-----LILSIAVILGTQATM 186 Query: 168 EMA------WRVMFVIGLLPALLVVYVRRSVPETEAF--LAGQKAAAGKPATSTLLGIFR 219 +MA WRV F+I + + VYVR + E+ F L Q + P T Sbjct: 187 DMASFKEWGWRVPFIISIAMLIFSVYVRAKLHESPVFTRLKAQGRLSKNPVRDTFFKWPS 246 Query: 220 PDVLRLTIIGSLLGVGA--HGGYYALMTWLPTYLKTEKHLSVLSTGGYLAVIIVAFWCGC 277 ++ L + G G GA G + +M +L + +L +I + F G Sbjct: 247 LKMILLALFGVTAGQGATYFTGQFYVMIFL-------QQAVMLDQRTVYTLICIGFLIGA 299 Query: 278 ---IVSAQLLDRIGRR 290 + L DR+GR+ Sbjct: 300 PAFVFFGWLSDRLGRK 315 >gi|152982554|ref|YP_001355030.1| major facilitator superfamily multidrug-efflux transporter [Janthinobacterium sp. Marseille] Length = 409 Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 140/296 (47%), Gaps = 29/296 (9%) Query: 70 GALSDRYGRVKTLQITIIWFSLFTFLSAFAQSYPQLLILKALQGFGFGGEWAAGAVLMAE 129 G SD+YGR + + I +I F+L +F++A A + ++I +++QG G AA +A+ Sbjct: 77 GIASDKYGRKRIIVIGLILFALGSFIAAAADNIIWVIIGRSVQGAG--AISAAVTAFIAD 134 Query: 130 TIRAEHRGKAMGSVQSAWAVGWGGAVLLFSVLFTMLPQEMAWRVMFVIGLLPALLVVYVR 189 + R EHR KAM V + + + G+++L +L+ + + + ++ +L +V+YV Sbjct: 135 STREEHRTKAMAMVGGSIGLTFAGSLILSPLLYQWIGMGGIFALTGILSVLAIFVVIYVV 194 Query: 190 RSVPETEAFLAGQKAAAGKPATSTLLGIF-RPDVLRLTIIGSLLGVGA-HGGYYALMTWL 247 + P PA ++ I +++RL GV A H A+ + Sbjct: 195 PAAPSL------------PPAQVSIREILAHGELMRLN-----FGVFALHLTQMAMFVVV 237 Query: 248 PTYLKTEKHLSVLST-GGYLAVIIVAFWCGCIVSAQLLDRIGRRRTVAFFALCCVATVLC 306 P+ L L + YL V+I +F + + ++ G+ + V A+ + V Sbjct: 238 PSALIRFAQLPLAEHWKIYLPVVIASFVL-MLPPIFIGEKRGKSKQVFVAAIALLLLVQV 296 Query: 307 YIFLPLSDTQML---VCGFPLGFFAAG--IPASLGALFNELYPSGIRGTGVGFCYN 357 ++L LS TQ+ + G L FF A + AS +L + + P G +G +G YN Sbjct: 297 GMWLVLSQTQVHWTWLVGLLLAFFVAFNILEASQPSLVSRIAPPGSKGAALG-VYN 351 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.140 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 951,800 Number of extensions: 41176 Number of successful extensions: 272 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 266 Number of HSP's successfully gapped: 14 Length of query: 413 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 327 Effective length of database: 903,079 Effective search space: 295306833 Effective search space used: 295306833 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)