BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4467.p (512 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 371 e-104 gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 362 e-101 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 355 3e-99 gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis pro... 352 3e-98 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 345 4e-96 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 371 bits (952), Expect = e-104, Method: Compositional matrix adjust. Identities = 237/516 (45%), Positives = 322/516 (62%), Gaps = 19/516 (3%) Query: 4 KIATKLLLSF---ITVLGLMSALGLFSLYQMDKVNDAATE-------IAHKWEPSIRISL 53 KI+T+L F +T++ +M+ +G+ L ++ D T+ +A +W ++ ++ Sbjct: 7 KISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTMLPKERLAQEWLSAVDVNG 66 Query: 54 MLERTLVRVRSTEFQHILGNEQTMATLEKALAERYAEFTTLQQDYRKLDLTKEESAAFDQ 113 RTL ++T + A +K + + LQ++ + T E+ F++ Sbjct: 67 --ARTLASAKTTSAED-------QAFFQKQMDKTSVRANELQKEIESMIKTPEDKRLFEE 117 Query: 114 LSNTLAAYLVEHRKIIALSHENHKDEALALTKGDSLKAYRAIEKQFSALRQANIDHKEEA 173 L AY + + L E EA L L A A A+ Q +EA Sbjct: 118 LVVARNAYRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQNEKKLIDEA 177 Query: 174 NTAADRVFDHSQHWIMGLLVAGILLGLALAIAIARVVSRPLAEALQLARRVADNDLSGQV 233 T+ F + ++GLL A + LG+ A +A ++RPL A+ +AR VA DLS ++ Sbjct: 178 GTSIQSAFLSGRSLLIGLLAAAVALGVFFAWRLAISITRPLNRAVTVARTVASGDLSAKI 237 Query: 234 NVHSRDETGQLMLALNHMTYSLGEMVGEVHRSIAIINTASGEIAHGNADLSARTESQASS 293 V S DETGQLM AL MT SL + V EV I TAS +IA GN DLS+RTE QASS Sbjct: 238 EVSSNDETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTEEQASS 297 Query: 294 LEETASAMEELTSTVRQNAEHAHQANELVSTSTRLAQQGGAVVDRVVQTMGEIRSGSARI 353 L ETA++M +LTSTVRQNA++A QAN L +++ +A +GG+VV VV TM I + +I Sbjct: 298 LGETAASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASINESARKI 357 Query: 354 ADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAREIKELI 413 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAA+EIK LI Sbjct: 358 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKILI 417 Query: 414 EGSVQQVASGADLVDQAGKTMHEIVDSVARVATLMSEIAVASREQSRGIDEINHAVTQMD 473 SV +V +G+ LV++AG TM+EIVDSV RV +M+EI AS+EQS GID++N A+ QMD Sbjct: 418 GDSVGKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQAIGQMD 477 Query: 474 EGTQQNAALVEQAAAAAHSLRDQTDQLASLVARFRL 509 + TQQNAALVE+AAAAA SL+DQ LA +V++F+L Sbjct: 478 QVTQQNAALVEEAAAAAESLQDQAGNLARVVSQFKL 513 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 362 bits (929), Expect = e-101, Method: Compositional matrix adjust. Identities = 229/523 (43%), Positives = 319/523 (60%), Gaps = 29/523 (5%) Query: 2 DRKIATKLLLSFITVLGLMSALGLFSLYQMDKVNDAATEIAHKWEPSI-----------R 50 + KI KL LSF V L+ + L S Q+ ++N++ I+ P + Sbjct: 6 NMKIRQKLTLSFGVVFALLVVITLLSNIQLGQLNNSIKLISKDRYPKTILANSVQIEVNK 65 Query: 51 ISLMLERTLVRVRSTEFQHILGNEQTMATLEKALAERYAEFTTLQQDYRKLDLTKEESAA 110 I+L L ++ + + ++ + Q +K + E + + Q A Sbjct: 66 IALNLRDIMLSSDPAKIKQLVSDTQAS---DKKMNEGLEQLRAVAQTEEDNRYVSAAIVA 122 Query: 111 FDQLSNTLAAYLVEHRKIIALSHENHKDEALALTKGDSLKAYRAIEKQFSALRQANIDHK 170 DQ Y+ ++ L+ + EA + + ++ ++ A D++ Sbjct: 123 RDQ-------YVPARDTLLQLAQDGKTAEAKTYLD----QVFMPVQVKYFIALDAMFDYQ 171 Query: 171 EE-ANTAADRVFDHS-QHWIMGLLVAGILLGLALAIA--IARVVSRPLAEALQLARRVAD 226 N A D S Q + ++AGI L L++A+ + R ++RPL A+ +ARRVA Sbjct: 172 GSLMNVAGDAASATSVQARTIINILAGISLLLSIAVGWWVTRSITRPLNTAVGVARRVAQ 231 Query: 227 NDLSGQVNVHSRDETGQLMLALNHMTYSLGEMVGEVHRSIAIINTASGEIAHGNADLSAR 286 DLSG V V + +E GQLM AL M +L +V +V I ASGEIA GN DLS+R Sbjct: 232 GDLSGPVFVKTTNEVGQLMAALKTMNDNLHHIVTQVRNGTGTIANASGEIARGNMDLSSR 291 Query: 287 TESQASSLEETASAMEELTSTVRQNAEHAHQANELVSTSTRLAQQGGAVVDRVVQTMGEI 346 TE QASSLEETASAMEELTSTVR+NA++A QAN+L +++T++A+QGG+VV V+ TM I Sbjct: 292 TEQQASSLEETASAMEELTSTVRENADNAQQANQLAASATKVARQGGSVVHEVIATMAAI 351 Query: 347 RSGSARIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAA 406 + S +IADI GVID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA AA Sbjct: 352 NTSSKKIADITGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAA 411 Query: 407 REIKELIEGSVQQVASGADLVDQAGKTMHEIVDSVARVATLMSEIAVASREQSRGIDEIN 466 EIK LI+ SV +V +G+ LV QAG T+ E+V SV ++ +++ I+ AS+EQS GI+++ Sbjct: 412 MEIKALIDDSVAKVDNGSKLVQQAGLTIDEVVTSVGSLSGIVAAISNASQEQSAGIEQVG 471 Query: 467 HAVTQMDEGTQQNAALVEQAAAAAHSLRDQTDQLASLVARFRL 509 A+ Q+DEGTQQNAALVEQ+AAAA SLR+Q DQL LV+ F+L Sbjct: 472 QAIVQIDEGTQQNAALVEQSAAAAQSLREQADQLMQLVSIFKL 514 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 355 bits (911), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 236/522 (45%), Positives = 325/522 (62%), Gaps = 31/522 (5%) Query: 4 KIATKLLLSFITVLGLMSALGLFSLYQMDKVNDAATEIAHKWEPSIRISLMLERTLVRVR 63 KI +L LSF +++ L+ L + ++ +NDA +E+ P + L V Sbjct: 5 KIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYP--------KTVLANVM 56 Query: 64 STEFQHILGN-EQTMATLEKALAERYAEFTTLQQDYRKLD---LTKEESAAFDQLSNTLA 119 + I N + EKA + AE T + + L+ + E++ ++ T+A Sbjct: 57 KDDLNQIARNMRNALLMTEKAAIQ--AELTQIGKATDSLNNALVELEKTVRSERGRQTIA 114 Query: 120 AYLVEHRKIIALSHE-------NHKDEALAL----TKGDSLKAYRAIEKQFSALRQANID 168 + K + L + KDEA+AL + L +I+K + Sbjct: 115 GLQADRSKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKK 174 Query: 169 HKEEANTAADRVFDHSQHWIMGLL-VAGILLGLALAIAIARVVSRPLAEALQLARRVADN 227 EAN A + ++G+ + +L+ A+ R ++RPL++A+ LAR+VAD Sbjct: 175 SGAEANAKASQT-----QLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADG 229 Query: 228 DLSGQVNVHSRDETGQLMLALNHMTYSLGEMVGEVHRSIAIINTASGEIAHGNADLSART 287 DL+G + V S+DETGQL+ AL M L ++V +V I +AS +IA GN DLS+RT Sbjct: 230 DLTGSIVVESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRT 289 Query: 288 ESQASSLEETASAMEELTSTVRQNAEHAHQANELVSTSTRLAQQGGAVVDRVVQTMGEIR 347 E QASSLEETAS+MEELTSTV+QNAE+A Q+N+L +++ +A +GGAVV +VV TMGEI Sbjct: 290 EQQASSLEETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEIN 349 Query: 348 SGSARIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAR 407 + +I DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AA+ Sbjct: 350 DSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAK 409 Query: 408 EIKELIEGSVQQVASGADLVDQAGKTMHEIVDSVARVATLMSEIAVASREQSRGIDEINH 467 EIKELI SV +V+ G+ LVD AG TM E+V+SV RV +MSEI AS+EQ+ GI++IN Sbjct: 410 EIKELIGDSVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQ 469 Query: 468 AVTQMDEGTQQNAALVEQAAAAAHSLRDQTDQLASLVARFRL 509 AV QMD+ TQQNAALVE+AAAAA SL+ Q L+ +V F+L Sbjct: 470 AVMQMDQVTQQNAALVEEAAAAAESLQGQASHLSQVVGVFKL 511 >gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 549 Score = 352 bits (903), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 193/309 (62%), Positives = 240/309 (77%) Query: 201 ALAIAIARVVSRPLAEALQLARRVADNDLSGQVNVHSRDETGQLMLALNHMTYSLGEMVG 260 A AI I R +++PL A+ +A R AD DL+G + S+DE G LM AL M L ++V Sbjct: 206 ACAIVITRSITKPLRSAIDVASRAADGDLTGDIGKPSKDEIGDLMRALGGMNDGLKKIVN 265 Query: 261 EVHRSIAIINTASGEIAHGNADLSARTESQASSLEETASAMEELTSTVRQNAEHAHQANE 320 +V INTAS EIAHGN DLS+RTE QA+SLEETAS+MEELTSTV+QNAE+A QAN+ Sbjct: 266 DVKAGTDFINTASAEIAHGNLDLSSRTEQQAASLEETASSMEELTSTVKQNAENAQQANQ 325 Query: 321 LVSTSTRLAQQGGAVVDRVVQTMGEIRSGSARIADIIGVIDGIAFQTNILALNAAVEAAR 380 L +++ +A +GGAVV ++ TMG I S S +I DIIGVIDGIAFQTNILALNAAVEAAR Sbjct: 326 LAVSASDVAAKGGAVVKEMISTMGAINSSSRKIVDIIGVIDGIAFQTNILALNAAVEAAR 385 Query: 381 AGEQGRGFAVVATEVRSLAQRSAAAAREIKELIEGSVQQVASGADLVDQAGKTMHEIVDS 440 AGEQGRGFAVVATEVRSLAQRSAAAA+EIK LI SV V +G+ LV +AGKTM ++V+S Sbjct: 386 AGEQGRGFAVVATEVRSLAQRSAAAAKEIKSLIGDSVSNVDAGSKLVSEAGKTMDDVVNS 445 Query: 441 VARVATLMSEIAVASREQSRGIDEINHAVTQMDEGTQQNAALVEQAAAAAHSLRDQTDQL 500 + V +M+EI AS+EQS GI+++N A++QMD+ TQQNAALVE+AAAA+ SLRDQ D+L Sbjct: 446 IRHVTDIMNEIMAASQEQSSGIEQVNTAISQMDQVTQQNAALVEEAAAASQSLRDQADKL 505 Query: 501 ASLVARFRL 509 A +V F+L Sbjct: 506 AQIVNVFKL 514 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 345 bits (885), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 200/346 (57%), Positives = 260/346 (75%), Gaps = 2/346 (0%) Query: 164 QANIDHKEEANTAADRVFDHSQHWIMGLLVAGILLGLALAIAIARVVSRPLAEALQLARR 223 Q+N+ HK A A V ++Q + L V +++ L R ++RPL++A+ LAR+ Sbjct: 168 QSNLMHK--AGEDAHEVSANAQQLVGILSVIAVIISAFLGFLATRSITRPLSQAVGLARK 225 Query: 224 VADNDLSGQVNVHSRDETGQLMLALNHMTYSLGEMVGEVHRSIAIINTASGEIAHGNADL 283 VAD DL+G + V S+DETGQL+ AL M L +V +V I TAS +IA GN DL Sbjct: 226 VADGDLTGTIVVTSKDETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDL 285 Query: 284 SARTESQASSLEETASAMEELTSTVRQNAEHAHQANELVSTSTRLAQQGGAVVDRVVQTM 343 S+RTE QASSLEETAS+MEELTSTV+QNA++A Q+N+L T++ +A +GGAVV +VV+TM Sbjct: 286 SSRTEEQASSLEETASSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETM 345 Query: 344 GEIRSGSARIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA 403 G I + +I DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA Sbjct: 346 GSINDSANKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSA 405 Query: 404 AAAREIKELIEGSVQQVASGADLVDQAGKTMHEIVDSVARVATLMSEIAVASREQSRGID 463 +AA+EIK LI+ SV++V +G+ LV AG TM E+V+SV RV +M EI AS+EQ+ GI+ Sbjct: 406 SAAKEIKTLIDDSVEKVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIE 465 Query: 464 EINHAVTQMDEGTQQNAALVEQAAAAAHSLRDQTDQLASLVARFRL 509 +IN AV QMD+ TQQNAALVE+AAAAA SL+DQ + L+ +V+ F+L Sbjct: 466 QINQAVMQMDQVTQQNAALVEEAAAAAESLQDQANNLSQVVSVFKL 511 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.127 0.331 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 815,401 Number of extensions: 26602 Number of successful extensions: 208 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 162 Number of HSP's successfully gapped: 20 Length of query: 512 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 425 Effective length of database: 899,382 Effective search space: 382237350 Effective search space used: 382237350 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)