BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4465.p
         (556 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981065|ref|YP_001351747.1| inner membrane protein [Janthin...   105   1e-23
gi|152983101|ref|YP_001353454.1| hypothetical protein mma_1764 [...    94   2e-20

>gi|152981065|ref|YP_001351747.1| inner membrane protein
           [Janthinobacterium sp. Marseille]
          Length = 568

 Score =  105 bits (261), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 132/492 (26%), Positives = 199/492 (40%), Gaps = 67/492 (13%)

Query: 67  VVGLFFLDAAIKGFLRDYFGLRPNPILVLQAIFNTNPAESSEFFRHNGRDLAEAVGLL-- 124
           ++ LF + AA   ++  Y       ++  + I  T+  E+SE F  N        G+L  
Sbjct: 104 LIVLFLVTAAASYYMNKYTVFFNTEMV--RNILRTDVKEASELFSLNFCIHIFIFGVLPS 161

Query: 125 WLMWGGLWLGERWLRRRESGRAPAPWRWRGRAVVGGLLGVFVAL------------HFNP 172
            L+W         LR R +     P R   RA++  LL +  AL             F+ 
Sbjct: 162 LLVWK--------LRLRTT-----PLR---RAILMRLLYIVGALAVTVGATMLIFQDFSS 205

Query: 173 TM--AKENPLLFWPIRYLDYRAQMAQAASMEANVARNMAHRSDWQVSYHGPERNT---LV 227
            M   KE   L  P  YL    ++  A + +AN  + +    D +++     R      V
Sbjct: 206 LMRNQKEVRFLITPSNYLFSLTRVVAADTAQANTPK-IKISDDAKLAAGWGARTKPMLFV 264

Query: 228 WVIGESLNRANMSLYGYERHTSPTLEAMRQDLIVFRDVVSSEPATMASLMKMLTPADLN- 286
            V+GE+   AN  L GYE  T+P L  +  D++ F    S    T  S+  M +    + 
Sbjct: 265 LVVGETTRAANWGLNGYEHQTTPELSKL--DVVNFPHATSCGTNTEVSVPCMFSIYGRHN 322

Query: 287 -DPQAWNSKPDVLMLAREAGFRIHWLSNQPPNDGWLGLVSRRADEQVFINK---GAGRGE 342
            D     S   +L +  + G +  W  NQ    G    V    +EQ+  +        GE
Sbjct: 323 YDEAKIRSHESLLHIIDKVGVKTVWRDNQAGCKG----VCDGLEEQMLSDSKHPALCDGE 378

Query: 343 NNFDGNLLPALQSALQDPAPKKLIVV-HLLGAH-PTYDMRYPSQYAQFDSVRDGVMEKLE 400
              D  +L  +   +Q      L VV H LG H P Y  RYP     F    D       
Sbjct: 379 RCLDEIMLEGMDGVVQKAGNGNLFVVLHQLGNHGPAYYRRYPGTMRTFTPTCD------- 431

Query: 401 NADRSPWIR-QLRNEYDNAMAYNDYVVGNMLRLTMNTARQDNASLLLSSDHAQEVG-HTR 458
            AD S   R Q+ N YDN + Y D+ +   +    +    D A L LS DH + +G H  
Sbjct: 432 TADLSKCNREQITNSYDNGVLYTDHFLAKTISYLKSQTSYDTAMLYLS-DHGESLGEHGI 490

Query: 459 NHAG--QSVADASGYEIPMLVW-TRAFTGKSAQDKAQLEYR---PYQTDQLEHTVMGLLG 512
              G   S+A     E+PM++W +  F      +K  L+ R   P   D L H+++G+L 
Sbjct: 491 YLHGLPYSIAPKEQTEVPMVMWMSPGFAASFGVNKDCLQRRAGNPVSQDNLFHSILGMLQ 550

Query: 513 VQSRYYDARHDI 524
           ++SRYYD   D+
Sbjct: 551 IESRYYDKELDM 562


>gi|152983101|ref|YP_001353454.1| hypothetical protein mma_1764
           [Janthinobacterium sp. Marseille]
          Length = 505

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 140/310 (45%), Gaps = 20/310 (6%)

Query: 229 VIGESLNRANMSLYGYERHTSPTLEAMRQDLIVFRDVVSSEPATMASLMKMLTPA--DLN 286
           VIGE+   A+  L G+ R T+P L A+  DL  F D+ S   +T  SL  + + +  D  
Sbjct: 201 VIGETARAADFQLMGHSRQTNPQLSAI-NDLYRFTDMKSCGTSTAVSLPCIFSGSGRDEF 259

Query: 287 DPQAWNSKPDVLMLAREAGFRIHWLSNQPPNDGWLGLVSRRADEQVFINKGAGRGENNFD 346
           D     S+ ++L    + G  + W  N     G    V   A +        G+ +   D
Sbjct: 260 DVAKERSRTNLLDTLSKNGVAVEWRDNNSGCKGICARVQTVAMQPAMAPSLCGQ-DYCHD 318

Query: 347 GNLLPALQSALQDPAPKKLIVVHLLGAH-PTYDMRYPSQYAQFD-SVRDGVMEKLENADR 404
             LL  L  ++   +  +L+V+H +G+H P Y  RYP+ +  F  + R   +        
Sbjct: 319 EVLLAGLSESITKKSTDQLLVLHNIGSHGPAYWRRYPASFEIFKPTCRTTDLGACS---- 374

Query: 405 SPWIRQLRNEYDNAMAYNDYVVGNMLRLTMNTARQDNASLLLSSDHAQEVGHT---RNHA 461
              + ++ N YDN + Y D+V+  M+ +  + + + + + L  SDH + +G      + A
Sbjct: 375 ---LDEIHNAYDNTILYTDHVLSQMITMLRDLSDRYDTAFLYVSDHGESLGENGLFLHGA 431

Query: 462 GQSVADASGYEIPMLVW-TRAFTGKSAQDK---AQLEYRPYQTDQLEHTVMGLLGVQSRY 517
               A      IP+L+W +  +  + + D      L+ + +  D + HTV+G+  +++  
Sbjct: 432 PYFFAPDVQKNIPLLLWMSEGYRNRMSVDSDCVKSLQTKAFSHDNIYHTVLGMTEIENAV 491

Query: 518 YDARHDILSE 527
           Y  + D+L +
Sbjct: 492 YTPKLDMLKQ 501


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,232,122
Number of extensions: 49193
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 2
Length of query: 556
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 468
Effective length of database: 895,685
Effective search space: 419180580
Effective search space used: 419180580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)