BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4464.p (428 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980179|ref|YP_001353230.1| D-amino-acid dehydrogenase [Jan... 114 1e-26 gi|152982324|ref|YP_001352357.1| D-amino-acid dehydrogenase, sma... 105 4e-24 gi|152982689|ref|YP_001352096.1| D-amino-acid dehydrogenase [Jan... 92 8e-20 >gi|152980179|ref|YP_001353230.1| D-amino-acid dehydrogenase [Janthinobacterium sp. Marseille] Length = 414 Score = 114 bits (284), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 107/424 (25%), Positives = 185/424 (43%), Gaps = 25/424 (5%) Query: 15 VIGAGAVGLMSAIHALDQGLQVSLLDFNPVGSEEAASYGNAGWLSSHSVIPPVEPGMWKK 74 VIGAG +G+ +A + G +V +++ + +EEA SYG++G L++ S+ P PG+ + Sbjct: 5 VIGAGVIGVSTAYFLAEAGHEVVVIERHNNVAEEA-SYGDSGILAASSIAPWAAPGVPRS 63 Query: 75 VPGYLMDPLGPLSIRWRYLPRLTPWLLRNLASASRERIRSTARALRTLVVDARSLHLEVA 134 YL+ P+ + + P + W+ R + A ER R ++ + +R + + Sbjct: 64 FLSYLLKSEAPVLLNQPWRPSMLGWMRRWMKEADIERYRINRERMQRIGFYSRDIMQMLR 123 Query: 135 QRAGVAHLID---TSGVLHVYRSRQHFDNDAFGWGVRRELGISWQELEGEALREREPDLD 191 +R H +D T G L ++R+ + + E I + L+ + L+ Sbjct: 124 ER----HQLDYEQTPGYLQLFRTERDLQLAKTSFDYLSEHNIPHKLLDAGQAHAVDSALN 179 Query: 192 P----AFGFAVQVDEAGHCKNPAAYLQALQAYALARGATRIDGRATGFRVEQGRLKAVLT 247 P A + DEAG+C + + ++A A A G + G E R + Sbjct: 180 PNTPLAGALYLPEDEAGNCP---LFTRQIRAQAQAMGVEFLFGSKVKSIEESKRGVHLQI 236 Query: 248 DAGEIVCDAAVICAGARSKALAAAAGDAVQLESERGY--HAVIRGHEQQARARTPMMVSE 305 D + V+ GA S L G + L + + Y A IR E A +V E Sbjct: 237 DDHSFSAECVVVAGGADSAKLLTPLGLHLPLRAVKSYCATATIRNFES---APVAAVVDE 293 Query: 306 -FKVIATQMETGLRIAGQVEFASFEAAPDWRRGEIMRDIACKLFPGLPRPLPAEDVQFWL 364 +K+ T+M +R+AG E S A R + + + P FW Sbjct: 294 AYKIAITRMGKRIRVAGTAELGSNNAE---LRQTALNTLLKVGYDWFPDACNYNTAAFWS 350 Query: 365 GRRPSTPDGMPCIGHSRASGDIIHAYGHGHIGLGCSARTGRIAAQLLAGQAPEIDLAPFS 424 G + PDG P +G R ++ GHG G +A +G++ A +++G+ P+IDL + Sbjct: 351 GSSLALPDGAPLLGACRVR-NVYLNIGHGSTGWAMAAGSGKVLADVISGRTPDIDLDGLT 409 Query: 425 PQRF 428 P R+ Sbjct: 410 PSRY 413 >gi|152982324|ref|YP_001352357.1| D-amino-acid dehydrogenase, small subunit [Janthinobacterium sp. Marseille] Length = 438 Score = 105 bits (263), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 101/430 (23%), Positives = 176/430 (40%), Gaps = 21/430 (4%) Query: 14 VVIGAGAVGLMSAIHALDQGLQVSLLDFNPVGSEEAASYGNAGWLSSHSVIPPVEPGMWK 73 +V+G+G +G SA G +V++++ P G+ + S+ N +S P P Sbjct: 4 IVLGSGIIGTSSAWFLNKLGHEVTVIERQP-GAAQETSFANGCQISVSHAEPWANPAAPM 62 Query: 74 KVPGYLMDPLGPLSIRWRYLPRLTPWLLRNLASASRERIRSTARALRTLVVDARSLHLEV 133 KV +L PL R+R W L L + R R + + +R V Sbjct: 63 KVLKWLGKEDAPLLYRFRPEWLQWKWALNFLRECTPARTNDNIRQIVAICEYSRQTLQAV 122 Query: 134 AQRAGVAHLIDTSGVLHVYRSRQHFDNDAFGWGVRRELGISWQELEGEALREREPDL--- 190 G+ + TSG+LH Y ++ FD+ + R+LG + + + EP L Sbjct: 123 RAETGINYDQLTSGILHFYTDQKEFDDSLPAAKLMRDLGCPRDSISADEVVRIEPALASI 182 Query: 191 --DPAFGFAVQVDEAGHCKNPAAYLQALQA-----YALARGATRIDGRATGFRVEQGRLK 243 G DE+G + L A A + TR+ +G + ++ Sbjct: 183 RNKIVGGDFTATDESGDVYKFTSGLAAKAAEAGVDFQYNTSVTRLLTEGSGANAKITGVE 242 Query: 244 AVLTDAGEIV--CDAAVICAGARSKALAAAAGDAVQLESERGYHAVIRGHEQQARARTPM 301 + D V DA V+ G+ S L G + + +GY A + + A + Sbjct: 243 VIGPDGRHKVLHADAYVMAMGSFSAELVRPLGIDLMIYPGKGYSATYKVIDPAAAPTVSL 302 Query: 302 MVSEFKVIATQMETGLRIAGQVEFASFEAAPDWRRGEIMRDIACKLFPGLPRPLPAEDVQ 361 +K++ +++ LR+AG E + + R E + +LFP ++ Sbjct: 303 TDDGYKLVVSRLGDRLRVAGTCELNGYTRDLNTARCEAITRRTRELFPD---ACDYDNPV 359 Query: 362 FWLGRRPSTPDGMPCIGHSRASGDIIHAYGHGHIGLGCSARTGRIAAQLLAGQAPEIDLA 421 +W G RP TP +P IG ++ S ++ GHG +G +GR A++++G P++D Sbjct: 360 YWTGLRPLTPSNVPYIGKTKYSNLYLNT-GHGTLGWTMGCGSGRALAEIVSGLQPDLDFK 418 Query: 422 ----PFSPQR 427 P+ P R Sbjct: 419 FTGMPYRPSR 428 >gi|152982689|ref|YP_001352096.1| D-amino-acid dehydrogenase [Janthinobacterium sp. Marseille] Length = 504 Score = 91.7 bits (226), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 95/420 (22%), Positives = 162/420 (38%), Gaps = 17/420 (4%) Query: 14 VVIGAGAVGLMSAIHALDQGLQVSLLDFNPVGSEEAASYGNAGWLSSHSVIPPVEPGMWK 73 +V+G+G +G SA G +V++++ P G+ + S+ N +S P G Sbjct: 66 IVLGSGIIGTASAWFLNKAGHEVTVVERQP-GAAQETSFANGCQISVSHATPWANKGAPL 124 Query: 74 KVPGYLMDPLGPLSIRWRYLPRLTPWLLRNLASASRERIRSTARALRTLVVDARSLHLEV 133 + L PL R+R W + L + +R + + +R V Sbjct: 125 TILKALGKEDAPLLYRFRAEWLQWKWGMNFLRECTPQRTVHNIHQIVAIAEYSRQTLQAV 184 Query: 134 AQRAGVAHLIDTSGVLHVYRSRQHFDNDAFGWGVRRELGISWQELEGEALREREPDLDPA 193 Q + + T G+LH Y ++ FD V RELG + L E + EP L Sbjct: 185 RQEVDIDYDCLTRGILHFYTQQKDFDESLASASVMRELGCPREPLTVEQAVQLEPALAHI 244 Query: 194 FGFAVQVD--EAGHCKNPAAYLQALQAYALARGATRIDGRATGFRVEQGRLKAVLTDAGE 251 V D E + + L A RG + +G A E Sbjct: 245 RKQIVGADFTETDESGDIYKFTTGLARKAQERGVHFEFNTTVTRLITEGTGAAARVTGVE 304 Query: 252 IV----------CDAAVICAGARSKALAAAAGDAVQLESERGYHAVIRGHEQQARARTPM 301 ++ DA V+ G+ S + G + + +GY A + Sbjct: 305 VINPEGRHMSLHADAFVMAMGSFSVPMLKPLGINLMIYPGKGYSATYPIVNPDLAPAVSL 364 Query: 302 MVSEFKVIATQMETGLRIAGQVEFASFEAAPDWRRGEIMRDIACKLFPGLPRPLPAEDVQ 361 + +K++ +++ LR+AG EF + + R E + +LFP + Sbjct: 365 IDDGYKLVLSRLGDKLRVAGTCEFNGYSRELNATRCEAITRRTRELFPD---ACDYSNPA 421 Query: 362 FWLGRRPSTPDGMPCIGHSRASGDIIHAYGHGHIGLGCSARTGRIAAQLLAGQAPEIDLA 421 +W G RP TP +P IG ++ S ++ GHG +G +GR A +++G PE++ A Sbjct: 422 YWAGLRPLTPSNVPYIGKTKFSNLYLNT-GHGSLGWTMGCGSGRAIADIISGVQPEVNFA 480 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.137 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,010,131 Number of extensions: 41605 Number of successful extensions: 137 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 128 Number of HSP's successfully gapped: 3 Length of query: 428 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 342 Effective length of database: 903,079 Effective search space: 308853018 Effective search space used: 308853018 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)