BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4459.p
         (819 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982150|ref|YP_001354424.1| ATP-dependent RNA helicase [Jan...    57   4e-09

>gi|152982150|ref|YP_001354424.1| ATP-dependent RNA helicase
           [Janthinobacterium sp. Marseille]
          Length = 1173

 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 11/144 (7%)

Query: 650 PTLMEEG---RRVLVFSQFTSMLQLIASELAAL---QLPCLMLTGEIDPAARGAVIAQFQ 703
           PT+ EE    R++++F++    L  +A ++  L   +    M+ G I    R  V   F+
Sbjct: 495 PTMREESGRQRKLIIFTEHRDTLNYLAVKIRGLIGNEDAVTMIHGGIKREERRKVQELFR 554

Query: 704 EEAVPLMLVSLKVGGVGLNLTAADTVVLVDPWWNPAVEQQAIARAHRLGQRRQVFVYKLV 763
            +    +L++    G G+NL  A+ +V  D  WNP   +Q   R HR+GQ     ++ +V
Sbjct: 555 NDPATRVLLATDAAGEGVNLQNANLMVNYDLPWNPNRLEQRFGRIHRIGQTEVCHLWNMV 614

Query: 764 I----EGSIEERLLE-LQARKSAL 782
                EG + +RL E L+  + AL
Sbjct: 615 AAETREGDVFQRLFEKLEVEREAL 638


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,813,196
Number of extensions: 74444
Number of successful extensions: 216
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 1
Length of query: 819
Length of database: 1,221,021
Length adjustment: 91
Effective length of query: 728
Effective length of database: 884,594
Effective search space: 643984432
Effective search space used: 643984432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)