BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4458.p (480 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982698|ref|YP_001352731.1| major facilitator transporter [... 148 9e-37 gi|152980838|ref|YP_001354006.1| major facilitator transporter [... 143 3e-35 >gi|152982698|ref|YP_001352731.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 460 Score = 148 bits (373), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 144/483 (29%), Positives = 220/483 (45%), Gaps = 43/483 (8%) Query: 9 SSVTSSANIPARLDRLPWSRWHWRVVIALGVAWVLDGLEVTLVG-SLGSVLERSDTLALD 67 + V+ AN+ ARL+RLP +R+ + + AW D +++ ++ LGS+ AL Sbjct: 5 TGVSLRANVAARLERLPMTRYQRSLFGIIATAWFFDSMDLGIMTFVLGSI---KAEFALT 61 Query: 68 AAQVGWSGSLYIAGTVLGALLFGRLTDRLGRKRLFMLTLALYMAATLATAFAQDFLWLAV 127 Q G S G LGA + G L D+ GRK +F ++ + A +LA FA D WL V Sbjct: 62 TTQAGLLASSSFLGMFLGAAIAGMLADKFGRKPVFQWSMIFWGAGSLACGFATDVTWLMV 121 Query: 128 CRLVTGLGIGGEYAAINSAIDELVPARVRGRVNLIINASFWIGAALGAG-LSLLLLDPQV 186 R+V G G+G E+ S + E+VPA+ RG+ I+ FW + AG L+ L L Sbjct: 122 FRVVLGFGMGMEFPIGLSMVSEIVPAKSRGKYVAILEG-FWPLGFIAAGILAYLTL---- 176 Query: 187 LGPALGWRACFLLGAVLAVAILLVRRHVPESPRWLLMHGRHAEAEAVVRHIEAEVAAQHG 246 P +GWR F+ ++ AV + +VRR+VPESPRWL GR AEA+AV IE V +G Sbjct: 177 --PLIGWRGIFIALSIPAVFVFIVRRYVPESPRWLEEVGRDAEADAVTTKIEKNVIKANG 234 Query: 247 ALPATPDSGHPQPGGGMMAWREIAQVLLHR-----YRQRSLMV-ALMMVAQAFVYNAIFF 300 P P P M ++ + L Y +R++M+ AL A Y + Sbjct: 235 GKPLP----TPAPPINEMPKKQDKRALFAELWHGVYAKRTVMLWALWFFALLGYYGLTTW 290 Query: 301 TYSLVLTRFFNVPDHRVALYIFPFALGNVLGPLLLGQLFDTIGRRRMIAATYLLAGA--- 357 +L+ + V + +Y +L + G + L + GR+ +L G+ Sbjct: 291 LGALLQQAGYEV--TKSVMYTVYISLAGIPGFIFSAWLLEKWGRKP--TCVLMLVGSACA 346 Query: 358 ----GLAATAWAFNAGWLDARTLALCWSAVFFVASAAASSAYLTASEVFPLRMRAMAISI 413 G ATA A A + A LC F S Y E++P R RA Sbjct: 347 AYVYGQVATAQAPVAQLIGA---GLCMQFFLF---GMWSVLYAYTPELYPTRSRATGSGF 400 Query: 414 FYAIGTGVGGFVAPVLLGWLIASGDRHAVAAGYALGAGLALLAGGCAWRWAVDAERRTLE 473 +IG +G + P +G ++ V A+ G+A L + + R+LE Sbjct: 401 ASSIGR-LGSLLGPFAVGVILPMTGHTGVFTLGAISFGIAAL---VVIVMGTETKGRSLE 456 Query: 474 DVA 476 +V+ Sbjct: 457 EVS 459 >gi|152980838|ref|YP_001354006.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 462 Score = 143 bits (360), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 139/485 (28%), Positives = 230/485 (47%), Gaps = 50/485 (10%) Query: 12 TSSANIPARLDRLPWSRWHWRVVIALGVAWVLDGLEVTLVGSL-GSVLERSDTLALDAAQ 70 T++ + RL+RLP +H + + + +A+ D L++ ++ L GS+ L AQ Sbjct: 8 TAAISAADRLERLPICNYHRFLFMVIALAFFFDNLDLAMMAYLLGSI---KTEFGLTTAQ 64 Query: 71 VGWSGSLYIAGTVLGALLFGRLTDRLGRKRLFMLTLALYMAATLATAFAQDFLWLAVCRL 130 G GS G LGA+ G L D+ GRK +F +++ ++ A+ + A D + LA+ R+ Sbjct: 65 AGMLGSASFVGMALGAVSSGMLADKFGRKPIFQISMIIWGVASYLCSTANDPVSLAIYRV 124 Query: 131 VTGLGIGGEYAAINSAIDELVPARVRGRVNLIINASFWIGAALGAGLSLLLLDPQVLGPA 190 + G+G+G E + + E +PA+ RG+ +++ + W A + AG L+ VL + Sbjct: 125 LLGIGMGMELPLAQTLLSEFIPAKRRGKYLALMDGN-WPIAFICAG----LMSYYVLA-S 178 Query: 191 LGWRACFLLGAVLAVAILLVRRHVPESPRWLLMHGRHAEAEAVVRHIEAEVAAQHGALPA 250 WR FLLGA+ AV + ++RR+VPESPRWL GRHAEA +V IE EV Sbjct: 179 YSWRTMFLLGAIPAVFLFVIRRYVPESPRWLESKGRHAEASNIVDGIEGEVKKILKV--- 235 Query: 251 TPDSGHPQPGGGMMAWRE---IAQVLLHRYRQRSLMV-ALMMVAQAFVYNAIFFTYSLVL 306 DS P MM +E I + YR+R+L V L A Y T+ L Sbjct: 236 --DSLPPIVQTAMMRDQEAFGIKVLWSPVYRRRTLTVWGLWFFALLGFYG--LNTWIGAL 291 Query: 307 TRFFNVPDHRVALYIFPFALGNVLGPLLLGQLFDTIGRRRMIAATYLLAGAGLAATAWAF 366 + + + LY A G + G L + + GR+ +T LL GA + F Sbjct: 292 LQQSGLEVTKSVLYTVYIACGGIPGFLWAAWVVERWGRKPACVST-LLGGAVM-----VF 345 Query: 367 NAGWLDARTLALCWSAVFFVASAAASSA------------YLTASEVFPLRMRAMAISIF 414 GW+ + SA F+A +A + Y E++P R RA + Sbjct: 346 IYGWVAS-------SAHTFIALVSAGAMMQFFMFGMWAVLYTYTPELYPTRARASGCGMA 398 Query: 415 YAIGTGVGGFVAPVLLGWLIASGDRHAVAAGYALGAGLALLAGGCAWRWAVDAERRTLED 474 +G +G + P ++G ++ + V + +GA ++A +R+ ++ +LE+ Sbjct: 399 STVGR-LGSLLGPTIVGVILPLVGQIGV---FTVGASCFVIAAFIVYRFGIETRGLSLEE 454 Query: 475 VAEWK 479 ++E K Sbjct: 455 ISEIK 459 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.326 0.138 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 900,932 Number of extensions: 31256 Number of successful extensions: 254 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 245 Number of HSP's successfully gapped: 8 Length of query: 480 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 393 Effective length of database: 899,382 Effective search space: 353457126 Effective search space used: 353457126 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)