BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4457.p (607 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(... 243 2e-65 gi|152982902|ref|YP_001352591.1| sigma-54-dependent transcriptio... 234 8e-63 gi|152981133|ref|YP_001355363.1| sigma-54 dependent response reg... 228 6e-61 gi|152979868|ref|YP_001354671.1| two-components system response ... 226 4e-60 gi|152982294|ref|YP_001354298.1| transcriptional regulator [Jant... 221 1e-58 >gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(I) [Janthinobacterium sp. Marseille] Length = 506 Score = 243 bits (621), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 127/268 (47%), Positives = 173/268 (64%), Gaps = 7/268 (2%) Query: 251 TPAEQAEAGEAELTRALVGTSSAFNAACHLLNRVAATDATVLFTGESGVGKERFARMLHQ 310 T EQ A E+ +G + A + R++ ++ TVL TGESG GKE AR LH+ Sbjct: 124 TSVEQVSAETPEI----LGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHK 179 Query: 311 IGKRERQPFIAINCAAIPETLIETELFGVERGAYTGATQSRAGRFELADGGTLFLDEVGT 370 R QPFIA+N AAIP+ L+E+ELFG ERGA+TGA +R GRFE A+ GTLFLDE+G Sbjct: 180 HSPRASQPFIALNTAAIPKDLLESELFGHERGAFTGAQATRRGRFEQAENGTLFLDEIGD 239 Query: 371 LSLVAQGKLLRVLQEGEFERVGSTRPVKVNVRVVAATNEDLAQAVRQGRFRQDLFFRLNV 430 + Q +LLRVL +G F RVG +P+K NVRV+AAT+++L VR+G FR+DL+ RLNV Sbjct: 240 MPFDLQTRLLRVLSDGHFYRVGGHQPLKANVRVIAATHQNLEHRVREGLFREDLYHRLNV 299 Query: 431 FPIHLPPLRERRDDIPLLMNHFLKFYGQRHGVAVRGFTQRAIQALLNYSFPGNIRELQNL 490 + LP LRERR+DIP+L HFL+ ++ GV V+ + A+Q L + PGN+R+L+NL Sbjct: 300 IRLRLPSLRERREDIPILTRHFLQQSAKQLGVEVKRMSDSAMQFLSSLELPGNVRQLENL 359 Query: 491 VERGVILAQGHPL---DLPHMFISGETL 515 ++A G + DLPH G+ Sbjct: 360 CNWITVMAPGQTVEAKDLPHELTEGQAF 387 >gi|152982902|ref|YP_001352591.1| sigma-54-dependent transcriptional activator [Janthinobacterium sp. Marseille] Length = 550 Score = 234 bits (598), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 139/340 (40%), Positives = 192/340 (56%), Gaps = 38/340 (11%) Query: 267 LVGTSSAFNAACHLLNRVAATDATVLFTGESGVGKERFARMLHQIGKRERQPFIAINCAA 326 L+ S L +VA ATVL +GESGVGKE R++H+ PF+ INC A Sbjct: 248 LITRSPGMQQITALAQKVAKVSATVLISGESGVGKEVLTRLIHKESAHHAGPFVKINCGA 307 Query: 327 IPETLIETELFGVERGAYTGAT-QSRAGRFELADGGTLFLDEVGTLSLVAQGKLLRVLQE 385 IP L+E+ELFG E GA+TGA Q + G E+AD GTLFLDE+G L L Q KLL+VLQ+ Sbjct: 308 IPRDLLESELFGYEAGAFTGAQRQGKVGMIEVADKGTLFLDEIGELPLDLQVKLLQVLQD 367 Query: 386 GEFERVGSTRPVKVNVRVVAATNEDLAQAVRQGRFRQDLFFRLNVFPIHLPPLRERRDDI 445 R+G TRP++V+VRVVAATN DL V +FR DLF+RLNV P+H+PPLRERR+DI Sbjct: 368 RTLTRLGGTRPIQVDVRVVAATNRDLQAMVDARQFRSDLFYRLNVVPLHVPPLRERREDI 427 Query: 446 PLLMNHFLKFYGQRHGVAVRGFTQRAIQALLNYSFPGNIRELQNLVERGVILAQGHPLDL 505 L+ H+L ++ + R +++A+ ALL+Y +PGN+REL+N+VER V+ A Sbjct: 428 LPLIQHYLDELNAQYDLDKR-LSEQALAALLDYDWPGNVRELRNMVERLVVTA------- 479 Query: 506 PHMFISGETLNDEVLSLALQGETGTLAGRQEDKPDAGGQQSLLDLLTQWRSTQQDAALSL 565 P I ++L + S L+ + L D Sbjct: 480 PESLIRSDSLPTLLRSSELESDLARL----------------------------DIKARS 511 Query: 566 PDMESTLIAEAIARAEGNLSAAARLLGISRAQLAYRQQKG 605 E ++ EA+ R GN AAA+ L +S++ + R + G Sbjct: 512 AHFERKIVKEAVERY-GNTRAAAKHLQVSQSTVVRRLKDG 550 >gi|152981133|ref|YP_001355363.1| sigma-54 dependent response regulator [Janthinobacterium sp. Marseille] Length = 481 Score = 228 bits (582), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 133/332 (40%), Positives = 182/332 (54%), Gaps = 45/332 (13%) Query: 267 LVGTSSAFNAACHLLNRVAATDATVLFTGESGVGKERFARMLHQIGKRERQPFIAINCAA 326 LVG S+A + R+A +TVL TGESG GKE AR +H++ R F+ INC A Sbjct: 186 LVGASAALEPIREAIKRLATVPSTVLITGESGTGKEIAARAMHKLSNRSHNHFVPINCGA 245 Query: 327 IPETLIETELFGVERGAYTGATQSRAGRFELADGGTLFLDEVGTLSLVAQGKLLRVLQEG 386 + +IE+ELFG +GA++GA SR G F A GGTLFLDEV L L Q KLLRVL+E Sbjct: 246 VAPDIIESELFGHIKGAFSGAASSREGLFFYAQGGTLFLDEVAELPLAMQVKLLRVLEEK 305 Query: 387 EFERVGSTRPVKVNVRVVAATNEDLAQAVRQGRFRQDLFFRLNVFPIHLPPLRERRDDIP 446 VG+ R + V+VRV+AATN ++ +AV++GRFRQDL++RLNV +H+PPLRER +DIP Sbjct: 306 RIRPVGAEREIPVDVRVIAATNRNVEEAVQEGRFRQDLYYRLNVVQLHMPPLRERTEDIP 365 Query: 447 LLMNHFLKFYGQRHGVAVRGFTQRAIQALLNYSFPGNIRELQNLVERGVILAQGHPLDLP 506 L +F++ Q+ GV + +L YS+PGN+REL+NL+ER +IL Sbjct: 366 ALAEYFVRQLAQQLGVPAKKPDSALFASLAGYSWPGNVRELRNLIERWLILGN------- 418 Query: 507 HMFISGETLNDEVLSLALQGETGTLAGRQEDKPDAGGQQSLLDLLTQWRSTQQDAALSLP 566 + + TG ST + ++L Sbjct: 419 ------------ISDVTAANNTG--------------------------STTTNGDVTLE 440 Query: 567 DMESTLIAEAIARAEGNLSAAARLLGISRAQL 598 +E I + +A GN + A R LGISR L Sbjct: 441 AVEKQHILKILAEVGGNKTEAGRRLGISRKTL 472 >gi|152979868|ref|YP_001354671.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 471 Score = 226 bits (575), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 138/342 (40%), Positives = 193/342 (56%), Gaps = 21/342 (6%) Query: 267 LVGTSSAFNAACHLLNRVAATDATVLFTGESGVGKERFARMLHQIGKRERQPFIAINCAA 326 L+G S A A + R+A + A V +GESG GKE AR +H R +PF+A+NC A Sbjct: 140 LMGQSEAMLALRAQIARLARSMAPVAISGESGSGKELAARDIHAQSARSDKPFVAVNCGA 199 Query: 327 IPETLIETELFGVERGAYTGATQSRAGRFELADGGTLFLDEVGTLSLVAQGKLLRVLQEG 386 IPE L+E E FG +GA+TGA R G F+ A+GGTL LDEV L L Q KLLR +QE Sbjct: 200 IPEALMEAEFFGYRKGAFTGAVDDRDGFFQAANGGTLLLDEVADLPLAMQVKLLRAIQER 259 Query: 387 EFERVGSTRPVKVNVRVVAATNEDLAQAVRQGRFRQDLFFRLNVFPIHLPPLRERRDDIP 446 +VG+T V+VR+++AT+++L V +G FRQDL++RLNV ++LPPLRER DDI Sbjct: 260 RVRKVGATTEEPVDVRIISATHQNLHDCVGRGTFRQDLYYRLNVIELNLPPLRERLDDIA 319 Query: 447 LLMNHFLKFYGQRHGVAVRGFTQRAIQALLNYSFPGNIRELQNLVERGVILAQGHPLDLP 506 LL L R T A++ALL YSFPGN+REL+N++ER + A +++ Sbjct: 320 LLAKAILT----RLDAGQARLTPAALEALLQYSFPGNVRELENILERALAFANDGVIEVS 375 Query: 507 HMFISG----ETLNDEVLSLALQGETGTLAGRQEDKPDAGGQQSLLDLLTQWRSTQQDAA 562 + + + + E++ E +A PDA + DL Sbjct: 376 DLVLKAAHTPKAVAAEMVEALAVPEQAMVA------PDAKPLAATSDLPGSLPD------ 423 Query: 563 LSLPDMESTLIAEAIARAEGNLSAAARLLGISRAQLAYRQQK 604 L D+E +I A+++ + N + AA LLGIS QL YR Q+ Sbjct: 424 -HLDDVEREIIRRALSKTQFNRTQAAELLGISFRQLRYRMQR 464 >gi|152982294|ref|YP_001354298.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 371 Score = 221 bits (562), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 117/253 (46%), Positives = 163/253 (64%), Gaps = 1/253 (0%) Query: 267 LVGTSSAFNAACHLLNRVAATDATVLFTGESGVGKERFARMLHQIGKRERQPFIAINCAA 326 L G S+ ++ +VA T A VL GESG GKE A+ +HQ+ + + +PF+A+NC+A Sbjct: 45 LYGASAPMQQLFQMIGKVAPTTANVLIAGESGTGKELVAQAIHQLSREQDKPFVALNCSA 104 Query: 327 IPETLIETELFGVERGAYTGATQSRAGRFELADGGTLFLDEVGTLSLVAQGKLLRVLQEG 386 + LIE ELFG ERG++TGA + + G FE ADGGTLFLDEV +SL Q KLLRVL+ Sbjct: 105 VSPQLIEAELFGHERGSFTGAIRMQKGCFERADGGTLFLDEVTEMSLDMQVKLLRVLETS 164 Query: 387 EFERVGSTRPVKVNVRVVAATNEDLAQAVRQGRFRQDLFFRLNVFPIHLPPLRERRDDIP 446 F R+G+ +V VRVVAATN D +A++ G R DLF+RL VFP+ LPPLRER +DI Sbjct: 165 RFCRIGAEEETEVKVRVVAATNRDPVEAMKSGILRSDLFYRLAVFPLDLPPLRERGEDIR 224 Query: 447 LLMNHFLKFYGQRHGVAVRGFTQRAIQALLNYSFPGNIRELQNLVERGVILAQGHPLDLP 506 LL FL + G R F++ + + L Y++PGN+REL+N+V R I+A LP Sbjct: 225 LLAGLFLDQLNEEDGRN-RVFSKASWRLLNEYNWPGNVRELKNVVHRAYIMADQELELLP 283 Query: 507 HMFISGETLNDEV 519 + + ++D++ Sbjct: 284 AVNPNRSMVSDQI 296 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,452,644 Number of extensions: 63720 Number of successful extensions: 236 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 225 Number of HSP's successfully gapped: 7 Length of query: 607 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 518 Effective length of database: 891,988 Effective search space: 462049784 Effective search space used: 462049784 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)