BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4456.p (487 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrog... 258 8e-70 gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde deh... 175 5e-45 gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogen... 138 7e-34 >gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrogenase (NADP+) [Janthinobacterium sp. Marseille] Length = 490 Score = 258 bits (658), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 166/480 (34%), Positives = 257/480 (53%), Gaps = 12/480 (2%) Query: 8 DSACWQRHLF-RGRWEPAAQGATVIEPATGQPLTEVGLATPQDVDISVQAAVAAQAEWQA 66 D + H + G W V PA G +T+V Q+ + ++QAA AA W A Sbjct: 11 DPTILRNHAYINGAWVTGKASFDVNNPADGSKITDVPNLGAQETEQAIQAAHAAFPAWAA 70 Query: 67 VPPRERADLFRRAGALFQQHFDELARMVARETGGVLFKGEHEVREAIILCHLAAAMPLQA 126 +ERA + R L + D+LA ++ E G L + EV A + Sbjct: 71 KTGKERAGIMRIWFDLIIANADDLAALMTAEQGKPLIESRGEVIYGASFIEWFAEEAKRV 130 Query: 127 QGQVLPSV-PGRLSLARRAPLGVIGVISPFNFPLILTLRTVAPALAAGNAVVVKPDARTP 185 G V+ S + ++ + P+GV I+P+NFP+ + R VAPA+AAG +V+KP +TP Sbjct: 131 SGDVMASTWSDKRTVTIKQPIGVCASITPWNFPIAMITRKVAPAIAAGCTIVIKPAEQTP 190 Query: 186 VSGGFMLARVFEEAGLPAGLLHVLPGGAE----AGEALVSAPQVPMIAFTGSPAVGRRIG 241 +S +A + AG+P G+++V+ ++ G+ L S+P V ++FTGS VGR + Sbjct: 191 LSA-LAIAELAHRAGIPPGVINVVTSDSDQSIAVGKVLCSSPIVRHVSFTGSTPVGRILM 249 Query: 242 ELAGRHLKKVSLELGGANALVILEDADLDVAASNAAWGAWLHQGQICMAANRILVHRSQA 301 E +KK+ LELGG ++ +DADLD A A + + GQ C+ NR VH S Sbjct: 250 EQCAPTVKKIGLELGGHAPFIVFDDADLDAAVVGALQSKYRNAGQTCVCTNRFYVHESIY 309 Query: 302 PGLLERLVEKARHLPVGDGASGQVALGPLIDQRQLQRVHGLVQDSVAAGARLLAGGTYE- 360 +++L A + VG+G V GPLID + +++V V D+V+ GA+++ GG Sbjct: 310 DTFVQKLGAGAAKIKVGNGVEQGVLQGPLIDAQAVKKVEQHVSDAVSKGAKVITGGKQHA 369 Query: 361 --GLFYQPTVLADVKPGMRVFDEEIFGPVASVISYDSQEQAIALANQNQGGLAAGVISRS 418 G FY+PTVL+++ P M + EE FGPVA+VI + ++++A+A AN GLA+ SR Sbjct: 370 LGGYFYEPTVLSNISPDMLIMHEETFGPVAAVIKFKTEDEAVAAANDTDFGLASYFYSRD 429 Query: 419 VGRAMAVAAQLRQGMVHVNDQTVNDECVNPFGGPGIAGNGTSVGGPADWEEYTQWKWITV 478 +GR VA +L GMV +N +++E V PFGG +G G G EEY + K++ + Sbjct: 430 IGRVWRVAEKLEYGMVGINTGLISNE-VAPFGGVKQSGLGRE-GSKYGIEEYLEIKYLCM 487 >gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde dehydrogenase [Janthinobacterium sp. Marseille] Length = 505 Score = 175 bits (444), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 140/479 (29%), Positives = 220/479 (45%), Gaps = 17/479 (3%) Query: 14 RHLFRGRWEPAAQG--ATVIEPATGQPLTEVGLATPQDVDISVQAAVAAQAEWQAVPPRE 71 +H GR A G V PATG+ +V LA+ DV V A AA W P + Sbjct: 8 KHYINGRLTETAGGRQQDVFNPATGEASAQVVLASDADVQAVVATAKAAAPAWADTAPLK 67 Query: 72 RADLFRRAGALFQQHFDELARMVARETGGVLFKGEHEVREAIILCHLAAAMPLQAQGQVL 131 RA + + L ++H D+LA + RE G V + EV + + A +P + Q Sbjct: 68 RARILFKFKDLIEKHHDDLAAAITREHGKVFSDAKGEVTRGLEVVEFACGVPQLLKTQFT 127 Query: 132 PSVPGRL-SLARRAPLGVIGVISPFNFPLILTLRTVAPALAAGNAVVVKPDARTPVSGGF 190 ++ G + + R PLGV I+PFNFP ++ + ALA GN ++KP R P S Sbjct: 128 DNIGGGIDNWNLRQPLGVTAGITPFNFPFMVPMWMAPVALATGNTFILKPSERDP-SPSL 186 Query: 191 MLARVFEEAGLPAGLLHVLPGGAEAGEALVSAPQVPMIAFTGSPAVGRRI-----GELAG 245 M+A + ++AGLP G+ +VL G A + L+ P V ++F GS + I G Sbjct: 187 MVAELLQQAGLPDGVFNVLQGDKLAVDGLLQHPDVKAVSFVGSTPIAEYIYATGAARKGG 246 Query: 246 RHLKKVSLELGGANALVILEDADLDVAASNAAWGAWLHQGQICMAANRILVHRSQAPGLL 305 + +V G N LV++ DA+L+ A A+ G+ CMA + + A L+ Sbjct: 247 SYPLRVQALGGAKNHLVVMPDANLEQAVDALIGAAYGSAGERCMAISVAVAVGDIADKLV 306 Query: 306 ERLVEKARHLPVGDGASGQVALGPLIDQRQLQRVHGLVQDSVAAGARLL-------AGGT 358 L+ + + L V +G +GP++ ++ G + V AGA+LL G Sbjct: 307 AALIPRVKSLKVKNGMEADAEMGPVVSAAHKAKIEGYIDAGVKAGAKLLVDGRGLKVAGH 366 Query: 359 YEGLFYQPTVLADVKPGMRVFDEEIFGPVASVISYDSQEQAIALANQNQGGLAAGVISRS 418 +G F + V P M ++ EEIFGPV V+ + A+ L N+++ G + + Sbjct: 367 DKGFFLGGCLFDHVTPEMTIYQEEIFGPVLCVLRVPNFAAALELINRHEFGNGVSLFTSD 426 Query: 419 VGRAMAVAAQLRQGMVHVNDQTVNDECVNPFGGPGIAGNG-TSVGGPADWEEYTQWKWI 476 A + ++ GMV +N + FGG + G T G + YT++K I Sbjct: 427 GNTAREFSRRVEVGMVGINVPIPVPMAWHSFGGWKRSMFGDTHAYGEEGIKFYTRYKSI 485 >gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase [Janthinobacterium sp. Marseille] Length = 1242 Score = 138 bits (348), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 131/429 (30%), Positives = 195/429 (45%), Gaps = 33/429 (7%) Query: 50 VDISVQAAVAAQAEWQAVPPRERADLFRRAGALFQQHFDELARMVARETGGVLFKGEHEV 109 +++++Q A + WQA P ERA + +A LFQQH EL ++ RE G L E+ Sbjct: 623 LELALQHATSGINTWQAKPIAERAAILLQAADLFQQHATELIALLVREAGKTLPNAIGEL 682 Query: 110 REAIILCHLAAAMPLQAQGQVLPSVPGRLSLARRAPLGVIGVISPFNFPLILTLRTVAPA 169 REAI +A + + PLG++ ISP+NFPL + V+ A Sbjct: 683 REAIDFLRYYSAQAIASDAN--------------QPLGLVACISPWNFPLSIFTGQVSAA 728 Query: 170 LAAGNAVVVKPDARTPVSGGFMLARVFEEAGLPAGLLHVLPGGAEA-GEALVSAPQVPMI 228 LAA N V+ KP +TP+ + ++ +AG+P L LPG E G LV+ P+V + Sbjct: 729 LAAANVVLAKPAEQTPLIACRAV-QLLHQAGVPENALLFLPGSGETIGAQLVTDPRVSAV 787 Query: 229 AFTGSPAVGRRIG-ELAGRHL---KKVSL--ELGGANALVILEDADLDVAASNAAWGAWL 282 FTGS V + I +L R + K + L E GG N +++ A + + A+ Sbjct: 788 VFTGSTQVAQSIQRKLVQRSISEGKDIPLIAETGGQNTMIVDSSALCEQVVRDVISSAFD 847 Query: 283 HQGQICMAANRILVHRSQAPGLLERLVEKARHLPVGDGASGQVALGPLIDQRQLQRVHGL 342 GQ C A + + A L+ L + L +G +GP+ID + Sbjct: 848 SAGQRCSALRVLCLQDDIAEQTLQMLHGAMQELRIGRPDHLATDVGPVIDAEAQAHLQAY 907 Query: 343 VQDSVAAG--ARLLAGGTYEGLFYQPTV--LADVKPGMRVFDEEIFGPVASVISY--DSQ 396 ++ + AAG R L G F P + +AD+ R E+FGPV V+ Y D Sbjct: 908 IRQAQAAGKQVRQLPLPVTNGSFVAPCIIEIADINELQR----EVFGPVLHVLRYRRDDL 963 Query: 397 EQAIALANQNQGGLAAGVISRSVGRAMAVAAQLRQGMVHVNDQTVNDEC-VNPFGGPGIA 455 Q + N GL G+ +R V + G ++VN V V PFGG G++ Sbjct: 964 PQLLMDINSTGFGLTLGIHTRIDETIDYVVRHAQVGNIYVNRNIVGAVVGVQPFGGEGLS 1023 Query: 456 GNGTSVGGP 464 G G GGP Sbjct: 1024 GTGPKAGGP 1032 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,261,312 Number of extensions: 57601 Number of successful extensions: 203 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 189 Number of HSP's successfully gapped: 3 Length of query: 487 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 400 Effective length of database: 899,382 Effective search space: 359752800 Effective search space used: 359752800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)