BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4450.p
         (565 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979996|ref|YP_001352840.1| NAD synthetase [Janthinobacteri...   350   2e-97

>gi|152979996|ref|YP_001352840.1| NAD synthetase [Janthinobacterium
           sp. Marseille]
          Length = 537

 Score =  350 bits (897), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 219/564 (38%), Positives = 309/564 (54%), Gaps = 31/564 (5%)

Query: 2   LRIAIAQCNPTIGDFDGNLALHLAALQRAARAGADLLVFPELSICGYYPGDLLEEPRFLG 61
           +++AIAQ N T+GD  GN A      +RAA  GAD+++ PELS+ GY P DLL    F  
Sbjct: 3   VKVAIAQINSTVGDLAGNRARIAEFSRRAAEQGADIVLTPELSLVGYPPEDLLLRQSFYA 62

Query: 62  QAEQALQRLITATRDYPGLTAVIGAPRRNAGPGKPLFNALLALREGQIVAEYHKQLLPVY 121
           +  + L  L        GL  V+G P    G     +NA   L  G++   Y K  LP  
Sbjct: 63  KTTETLLALAADLAPLHGLHVVVGHPFEQDGQ---RYNAASVLLNGKVAGTYCKHDLPNA 119

Query: 122 GVFDDGRHFEAGPEVACVLPLKGQRVGFLICEDGWNDELRSYRINPFQRLAEADAQLVVS 181
            VFD+ R+F +  E   V  +KG R G  ICED W     +       R AEA AQ+++ 
Sbjct: 120 TVFDEKRYFTSVDE-PLVFEVKGVRFGINICEDTWFPHAPA-------RAAEAGAQVLLV 171

Query: 182 INASPSDIGKRSQRHALFQAACLRRQMALLYVNQVGGQDQLVYDGGSFAMSPTQGLAFEA 241
            N SP  + K+  R  +  A      M+L+Y N VGGQD+L++DG SF +     +  + 
Sbjct: 172 PNGSPFHMNKQHLRVDVMHANVTVHGMSLVYANLVGGQDELIFDGNSFVLDQAGEIRAQL 231

Query: 242 ARLAEDFQVLAFEAGRFLRSDGSSDALPLQQALATPEFQRRQIILGLRDYARRCGFGKVV 301
               ED Q++ F+ G+ +  DG+     + + L+      + ++LG+RDY  + GF   +
Sbjct: 232 QHCVEDLQIIEFQGGQPV--DGT-----IVEELSVEAQVYKALVLGVRDYIGKNGFPGAL 284

Query: 302 VGSSGGIDSALTIALAAEALGARNVVAVTMPSIFSSTGSVDDSLELCRALGVTLFRHPIA 361
           +G SGG+DSALT+A+A +ALGA  V A+ MPS +++  S  DS ++ + +GV      I 
Sbjct: 285 IGMSGGVDSALTLAVAVDALGADKVRAIMMPSPYTAEISWVDSRDMVKRVGVRYDEIGIN 344

Query: 362 ELVREFEEGFARAFGAPLRGLPLENLQARVRGAILMEYSNGYGALLLTTGNKSEISVGYC 421
           +    F    A  F    +    EN+QAR+RG ILM  SN +GA++LTTGNKSE++VGYC
Sbjct: 345 DCFEAFNRTLANEFKGLKQDTTEENIQARIRGTILMALSNKHGAIVLTTGNKSEMAVGYC 404

Query: 422 TLYGDTNGGLGLIGDLYKTEVYALARHLNASADREIIPRAIIDKPPSAELAPDQRDTDSL 481
           TLYGD  GG  ++ D+ KT VY L  + N  +D  +IP  I+ + PSAEL PDQ D DSL
Sbjct: 405 TLYGDMAGGFAVLKDIAKTLVYRLCAYRNIVSD--VIPERILTRAPSAELRPDQTDQDSL 462

Query: 482 PPYEVLDDILKWHIEGTRLPADEAQAAARAVEQLQASQQGAALVERICRMVALNEYKRRQ 541
           PPYEVLD I++ ++E  +   +   A  R  +           V RI  ++ +NEYKRRQ
Sbjct: 463 PPYEVLDAIMQMYMEENQSGVEIIAAGYRPED-----------VARITHLIKINEYKRRQ 511

Query: 542 SPPVIRVRARAFGSGRQIPIAVAF 565
           SP  IRV  RAFG   + PI   F
Sbjct: 512 SPVGIRVTHRAFGRDWRYPITSKF 535


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.138    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,256,833
Number of extensions: 52431
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 477
Effective length of database: 895,685
Effective search space: 427241745
Effective search space used: 427241745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)