BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4448.p
         (312 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg...    72   6e-14
gi|152982762|ref|YP_001353011.1| transcriptional activator MetR ...    59   3e-10
gi|152982492|ref|YP_001352911.1| LysR family transcriptional reg...    58   7e-10
gi|152981643|ref|YP_001352264.1| LysR family transcriptional reg...    55   7e-09

>gi|152982593|ref|YP_001352341.1| LysR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 297

 Score = 71.6 bits (174), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 6/182 (3%)

Query: 1   MEIKWVEDFLSVVETLNFSRSAKLRNVTQPAFGRRIRSLETWLGAELFDRSSYPCTLTPA 60
           +E++ +  F++V E ++F R+A   ++TQP   + I++LE  LG +LF R+S    LTPA
Sbjct: 3   IELRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALTPA 62

Query: 61  GESFVPIAKEMLNQSMQARLVLRGQLAGAQSSLRFAMPHTLLLTVFPKLLSEIEKKIGTI 120
           G + +P A+ +L Q+     ++R   +GA   L  A   T   +V P  L E  +    +
Sbjct: 63  GIALLPEAQRILQQTAALPDLMRRAASGASGRLSLAFVSTADYSVLPHFLREFREAYPQV 122

Query: 121 TTTVMAGNVHDAVMALVERNCDLLLCYDHRQQGIALDTERYAVLSLGKEPLRPYVKALPS 180
              +        +  L +   D+ L          L  +   VLS       P + A+P 
Sbjct: 123 EIDLREATTDVQLDELAQGRIDVGLLIPPLPDKAKLQLDYLPVLS------EPLILAVPK 176

Query: 181 GL 182
           GL
Sbjct: 177 GL 178


>gi|152982762|ref|YP_001353011.1| transcriptional activator MetR
           [Janthinobacterium sp. Marseille]
          Length = 306

 Score = 59.3 bits (142), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 2/144 (1%)

Query: 1   MEIKWVEDFLSVVETLNFSRSAKLRNVTQPAFGRRIRSLETWLGAELFDRSSYPCTLTPA 60
           +E++ ++  L++ E  N  R+A L NVTQ A   +I+ LE   G  LF+R S P   TPA
Sbjct: 5   LELRHLKTLLALREAGNLLRAAALLNVTQSALSHQIKQLEDHHGTPLFERKSTPVRFTPA 64

Query: 61  GESFVPIAKEMLNQSMQARLVLRGQLAGAQSSLRFAMP-HTLLLTVFPKLLSEIEKKIGT 119
           GE  + +A  +L Q  +    L     G    LR A+  HT    + P  +     +   
Sbjct: 65  GERLLKLADTVLPQVAETERDLVRLAQGVAGQLRIAVECHTCFDWLMPA-MDVFRGRWPE 123

Query: 120 ITTTVMAGNVHDAVMALVERNCDL 143
           +   +++G   D V  L E   D+
Sbjct: 124 VELDIVSGFQADPVGLLYEHRADV 147


>gi|152982492|ref|YP_001352911.1| LysR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 302

 Score = 58.2 bits (139), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 4/168 (2%)

Query: 1   MEIKWVEDFLSVVETLNFSRSAKLRNVTQPAFGRRIRSLETWLGAELFDRSSYPCTLTPA 60
           + ++ +  F++V ET  F+ +A+L  V+Q +    +R LE  LG  LFDR +    LT A
Sbjct: 3   ITLRQLRAFVTVAETGKFTLAAELLGVSQSSLSLLVRDLENLLGLRLFDRHTRRLELTDA 62

Query: 61  GESFVPIAKEMLNQSMQARLVLRGQLAGAQSSLRFAMPHTLLLTVFPKLLSEIEKK---I 117
           G   +P+A++ L   +      R  LA  +  +  A       TV P LL    ++   I
Sbjct: 63  GHDLLPVAQKTLMDLLSVVENSRDLLALKKGRVTIAAGSLHAATVIPDLLKSFNRRYPGI 122

Query: 118 GTITTTVMAGNVHDAVMA-LVERNCDLLLCYDHRQQGIALDTERYAVL 164
             I   V    V + ++A  V+    + L  D+      +  ++YAVL
Sbjct: 123 RVIVEDVAERQVRELIVAGTVDVGIGMTLDGDNSMLAQVIGRDKYAVL 170


>gi|152981643|ref|YP_001352264.1| LysR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 321

 Score = 54.7 bits (130), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%)

Query: 3   IKWVEDFLSVVETLNFSRSAKLRNVTQPAFGRRIRSLETWLGAELFDRSSYPCTLTPAGE 62
           I+ ++ F+ +VE  + S +A+    +QP   RR+++LE  LG  L  RS++   LT  GE
Sbjct: 12  IELMQTFVRIVEAGSLSAAAEQLKTSQPTVSRRLQALERSLGLRLLQRSTHVMKLTEDGE 71

Query: 63  SFVPIAKEMLNQSMQARLVLRGQLAGAQSSLRFAMPHTL 101
                AKE+L+        LRG     + +LR  +PH  
Sbjct: 72  RCFARAKELLDNWKAMEADLRGTQDEPEGTLRVLVPHAF 110


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 655,181
Number of extensions: 23092
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 6
Length of query: 312
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 229
Effective length of database: 914,170
Effective search space: 209344930
Effective search space used: 209344930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)