BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4445.p
         (110 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980937|ref|YP_001353338.1| ArsR family transcriptional reg...   171   1e-44

>gi|152980937|ref|YP_001353338.1| ArsR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 104

 Score =  171 bits (432), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 80/99 (80%), Positives = 89/99 (89%)

Query: 1   MRPYKHPEIAEFVLERVLYALSDSIRLEIVRHLARVECATCGELDGGRPKSTVSHHFKVL 60
           MRP+KHP  +EF LERVLYALSDSIRL+IVRHLARV+ A+CGELDGGRPKSTVSHHFKVL
Sbjct: 4   MRPFKHPAASEFSLERVLYALSDSIRLDIVRHLARVDAASCGELDGGRPKSTVSHHFKVL 63

Query: 61  REAGLVRTESNGTTHINTLRSADIEQRFPGLLSAILAQQ 99
           RE+GLV TE+ GT H+NTLR ADIE RFPGLL+AILAQ 
Sbjct: 64  RESGLVHTENTGTMHMNTLRRADIESRFPGLLNAILAQH 102


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 240,590
Number of extensions: 8245
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 110
Length of database: 1,221,021
Length adjustment: 71
Effective length of query: 39
Effective length of database: 958,534
Effective search space: 37382826
Effective search space used: 37382826
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)