BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4443.p
         (421 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982318|ref|YP_001354762.1| cytochrome c [Janthinobacterium...   248   5e-67
gi|152982006|ref|YP_001354842.1| cytochrome c oxidase subunit II...    63   3e-11

>gi|152982318|ref|YP_001354762.1| cytochrome c [Janthinobacterium
           sp. Marseille]
          Length = 428

 Score =  248 bits (633), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 145/418 (34%), Positives = 228/418 (54%), Gaps = 41/418 (9%)

Query: 15  LGALSMAHAADQDLVARGQYLARAGDCMACHSAAGKPAYSGGLAIDSGHGTIYSTNITPD 74
           LG  S+        + +G+YLAR G+CM+CH++ G  +Y+GG A+ +  G IY++N+TPD
Sbjct: 33  LGQASVPPTDPAQQLVQGEYLARVGNCMSCHTSRGGESYAGGRAVPTPFGNIYTSNLTPD 92

Query: 75  KEHGIGNYSEAQFANAVRHGVRADGTQLYPAMPYPSYAKVSDEDIHALYTYFMQGVKPVA 134
            E G+G ++   F  A+  G   DG+ LYPA PY +Y KV+  D  A++ Y +Q +  V+
Sbjct: 93  AETGLGKWNSNDFWQAMHDGKSKDGSLLYPAFPYTNYTKVTRADSDAIFAY-LQTLPAVS 151

Query: 135 STPPASDMSFPFNIRWGMKLWNAF------FANDKPFQEQAGWNDQIKRGAYLVEGLGHC 188
               A D+ FP++ R  + +W A       +AND   ++   WN    RGAYL +GLGHC
Sbjct: 152 QQNRAPDLRFPYDNRVALYVWRALYFRPGQYANDD--KQSVEWN----RGAYLAQGLGHC 205

Query: 189 GSCHTPRGVAMNEKASDSSQAQFLSGGDLN--GWAVPSLRG-----MPHWSAQDIVDYLQ 241
            +CH+PR     +    +     L GG +    W  P L G     + +W  + +   ++
Sbjct: 206 SACHSPR-----DALGGTDLKAELGGGMIPVLNWYAPPLNGDAQTSLGNWETEHLAALMK 260

Query: 242 TGRNKTASVAGEMSLVVEHSTAHLKSDDLQAIAAYLKTL-----SPVAASSSGGVTPQGA 296
           TG   + SV+G M+ VV  S  + K +D++A+A YLK+L     +PVAA+ S    P   
Sbjct: 261 TGTAPSRSVSGPMAEVVFGSLQYAKDEDIKAMALYLKSLPQQIPAPVAAAES---VP--- 314

Query: 297 EATAKKLTAAKDLSLGERLYLDNCAACHFVTGRGAPGIFPALDGATVVNADNPSALLHVI 356
           + T K +  A     G +LY + CA+CH  +G+G   I+PAL G+  +     +  + ++
Sbjct: 315 DETKKNMIKA-----GAKLYENQCASCHQESGKGVAAIYPALAGSRAITTPVATNAIRMV 369

Query: 357 LAGARTPSTEKAPSILVMPGFAHRLSDQEAAELASFVRQGWGNHAGAVSASEVSRMRA 414
           L G   PST   P    MP F H ++D+E A + +++R  WGN A AVS ++V+R R+
Sbjct: 370 LHGGYAPSTAGNPRPYGMPPFGHSMTDEEVASVVTYIRNSWGNQATAVSPNDVNRYRS 427


>gi|152982006|ref|YP_001354842.1| cytochrome c oxidase subunit II
           [Janthinobacterium sp. Marseille]
          Length = 386

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 12/107 (11%)

Query: 295 GAEATAKKLTAAKDLSLGERLYLDNCAACHFVTGRGAPGIFPALDGATVVNADNPSALLH 354
            A+   K  T  + +  GE++Y  NC ACH   G+G PG FPALD + +V     +A +H
Sbjct: 277 NADDPTKTWTVDELVQRGEKVYTANCIACHQANGKGVPGSFPALDASPIVTGPK-AANIH 335

Query: 355 VILAGARTPSTEKAPSILVMPGFAHRLSDQEAAELASFVRQGWGNHA 401
           +++ G              MP +   LSD E A + ++ R  W N A
Sbjct: 336 MVMEGKGA-----------MPAWKPVLSDTEIAAVITYTRNHWSNKA 371


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.130    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 952,674
Number of extensions: 39414
Number of successful extensions: 141
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 2
Length of query: 421
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 335
Effective length of database: 903,079
Effective search space: 302531465
Effective search space used: 302531465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)