BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4437.p (295 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981635|ref|YP_001352439.1| MetE/MetH family transcriptiona... 501 e-143 gi|152982762|ref|YP_001353011.1| transcriptional activator MetR ... 195 2e-51 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 70 2e-13 gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducibl... 69 3e-13 gi|152981629|ref|YP_001351947.1| cys regulon transcriptional act... 69 3e-13 >gi|152981635|ref|YP_001352439.1| MetE/MetH family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 303 Score = 501 bits (1289), Expect = e-143, Method: Compositional matrix adjust. Identities = 241/295 (81%), Positives = 266/295 (90%) Query: 1 MLDRIHLSIVQEVERQGSLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRHLRLTQ 60 ML+RIHL++V EVE+QGSLT AA VLHVTQSALSHSMKKLEQQLGT++W+REGR LRLTQ Sbjct: 1 MLERIHLAVVLEVEKQGSLTGAANVLHVTQSALSHSMKKLEQQLGTEVWVREGRSLRLTQ 60 Query: 61 AGQYLLAVANRVLPQLSLAEERLRQFAQGERGALRIGMECHPCYQWLLKVVSPYLAAWPD 120 AGQYLLAVANRVLPQL+LAEERLRQF+QGERGALRIGMECHPCYQWLLK+VSPYL+AWPD Sbjct: 61 AGQYLLAVANRVLPQLALAEERLRQFSQGERGALRIGMECHPCYQWLLKIVSPYLSAWPD 120 Query: 121 VDVDVKQKFQFGGIGALFGYEIDLLVTPDPLDKPGLVFEPVFDYEQVLVVAADHRLADAD 180 VDVDVKQKFQFGGIGALF YEIDLLVTPDPL KPGL FEPVFDYEQVLVVA DH LA Sbjct: 121 VDVDVKQKFQFGGIGALFAYEIDLLVTPDPLYKPGLKFEPVFDYEQVLVVARDHALAKVK 180 Query: 181 YVKPKQLSNEVLVSYPVPVDRLDIYTQFLAPAGIVPRRHKTIETTDIMLQMVASGRGVAA 240 YVKP+QL NEVL++YPV DRLD+Y QFL PAG+ P+RHKTIETTDIMLQMVASGRGVAA Sbjct: 181 YVKPEQLMNEVLITYPVATDRLDVYNQFLLPAGVTPKRHKTIETTDIMLQMVASGRGVAA 240 Query: 241 LPRWLVLEYAQQMAVVPVRLGKHGIAKHIYLGARESDVEIDYLRAFIDEARQAQA 295 LPRWLV EYA ++ VVPVRLG GIAK I+LGARE+D++ DYL+AFI AR+ A Sbjct: 241 LPRWLVQEYAGKVDVVPVRLGPDGIAKQIFLGAREADLDTDYLQAFIALAREPVA 295 >gi|152982762|ref|YP_001353011.1| transcriptional activator MetR [Janthinobacterium sp. Marseille] Length = 306 Score = 195 bits (496), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 111/296 (37%), Positives = 169/296 (57%), Gaps = 7/296 (2%) Query: 1 MLDRIHLSIVQEVERQGSLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRHLRLTQ 60 +L+ HL + + G+L AA +L+VTQSALSH +K+LE GT ++ R+ +R T Sbjct: 4 ILELRHLKTLLALREAGNLLRAAALLNVTQSALSHQIKQLEDHHGTPLFERKSTPVRFTP 63 Query: 61 AGQYLLAVANRVLPQLSLAEERLRQFAQGERGALRIGMECHPCYQWLLKVVSPYLAAWPD 120 AG+ LL +A+ VLPQ++ E L + AQG G LRI +ECH C+ WL+ + + WP+ Sbjct: 64 AGERLLKLADTVLPQVAETERDLVRLAQGVAGQLRIAVECHTCFDWLMPAMDVFRGRWPE 123 Query: 121 VDVDVKQKFQFGGIGALFGYEIDLLVTP--DPLDKPGLVFEPVFDYEQVLVVAADHRLAD 178 V++D+ FQ +G L+ + D+ + DP +K + + +F +E V +VA DH LAD Sbjct: 124 VELDIVSGFQADPVGLLYEHRADVAIVAEIDPDEK--VDYHALFRFEIVALVAHDHPLAD 181 Query: 179 ADYVKPKQLSNEVLVSYPVPVDRLDIYTQFLAPAGI-VPRRHKTIETTDIMLQMVASGRG 237 +++ + + L++YPVP D LD+ Q L PAG+ V RR T E T MLQ+VAS RG Sbjct: 182 KEFLTAEDFIGDTLITYPVPDDMLDVVRQVLKPAGVQVARR--TTELTVAMLQLVASRRG 239 Query: 238 VAALPRWLVLEYAQQMAVVPVRLGKHGIAKHIYLGARESDVEIDYLRAFIDEARQA 293 +A LP W Y + V R+ + G+ +Y E YL F+ R++ Sbjct: 240 IATLPVWAAQNYLNRDYVKAKRITREGLTGRLYAACLPETSEKPYLADFVTTTRES 295 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 69.7 bits (169), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 105/235 (44%), Gaps = 5/235 (2%) Query: 13 VERQGSLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRHLRLTQAGQYLLAVANRV 72 V +G LT AA + + Q LS ++ LE++LG ++ R R + LT++GQ LL A + Sbjct: 15 VAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELTESGQALLIDARLI 74 Query: 73 LPQLSLAEERLRQFAQGERGALRIGM-ECHPCYQWLLKVVSPYLAAWPDVDVDVKQKFQF 131 L Q++ E +R+ + GE G L +G E + ++ V+ + P V + V++ Sbjct: 75 LEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQKSPGVIMAVEESNTN 134 Query: 132 GGIGALFGYEIDLLVTPDPL-DKPGLVFEPVFDYEQVLVVAADHRLADADYVKPKQLSNE 190 + L +D+ P+ GL E + E ++ + HRLA P E Sbjct: 135 ELVEDLRHNRLDVAFIRSPIGSAAGLKMETMLVEEMIVALPITHRLAQRRKSLPLTALAE 194 Query: 191 ---VLVSYPVPVDRLDIYTQFLAPAGIVPRRHKTIETTDIMLQMVASGRGVAALP 242 +L P D AG PR + + L +VA+G GV+ +P Sbjct: 195 DDFILNRRPSGPGLYDSVIAACRAAGFSPRVVQEAKKNLSTLSLVAAGLGVSIVP 249 >gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducible genes activator [Janthinobacterium sp. Marseille] Length = 331 Score = 69.3 bits (168), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/270 (24%), Positives = 117/270 (43%), Gaps = 16/270 (5%) Query: 6 HLSIVQEVERQGSLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRHLRLTQAGQYL 65 L + V R+ AA V Q LS ++KKLE +LG ++ R G + +T G + Sbjct: 21 ELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPLGAQI 80 Query: 66 LAVANRVLPQLSLAEERLRQFAQGERGALRIGMECHPCYQWLLKVVSPYLAAWPDVDVDV 125 +A A RVL Q + +E +Q G R+G+ L +V + P + + + Sbjct: 81 VAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKTIIERVPQMPLVL 140 Query: 126 KQKFQFGGIGALFGYEIDLLVTPDPLDKPGLVFEPVFDYEQVLVVAADHRLADADYVKPK 185 ++ F + L E+D + P GL+ +PV+D V+ V H+ A+ D V Sbjct: 141 QENFTVKLLELLRQGELDAAIVALPFPDQGLLVQPVYDEPFVVAVPKHHKWANRDSVSTD 200 Query: 186 QLSNEVLV----SYPVPVDRLDIYTQF--LAPAGIVPRRHKTIETTDIMLQMVASGRGVA 239 L +E ++ + L++ + + +G R + + + MVASG G+ Sbjct: 201 DLKSETMLLLGNGHCFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLETIRHMVASGIGIT 260 Query: 240 ALPRWLVLEYAQQMAVVPVRLGKHGIAKHI 269 LP+ A +P K G+ ++I Sbjct: 261 VLPQ----------ASIPDMQAKDGMLRYI 280 >gi|152981629|ref|YP_001351947.1| cys regulon transcriptional activator [Janthinobacterium sp. Marseille] Length = 304 Score = 69.3 bits (168), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 111/242 (45%), Gaps = 13/242 (5%) Query: 6 HLSIVQEVERQG-SLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRHL-RLTQAGQ 63 L V+E R +LT A VL+ +QS +S +K LE +LG D+++R G+ L +T+AG Sbjct: 5 QLRFVREAIRNNLNLTEVAAVLYTSQSGVSKQIKDLEDELGIDLFVRSGKRLTSVTRAGD 64 Query: 64 YLLAVANRVLPQLSLAEERLRQFAQG----ERGALRIGMECHPCYQWLLKVVSPYLAAWP 119 + + R+L L E LR++A + G L I L +VV + +P Sbjct: 65 GAVEIVKRIL----LETENLRRYASQYSGVDTGQLIIAATHTQARYTLPRVVEQFNNEFP 120 Query: 120 DVDVDVKQKFQFGGIGALFGYEIDLLVTPDPLDK-PGLVFEPVFDYEQVLVVAADHRLAD 178 V +++ Q + E D+ + + LD+ P ++ P F + ++V H L Sbjct: 121 KVKLELHQGTPNQVAAMISNGEADIGIASEVLDQSPDILAYPCFSWNHQVIVPLGHPLTK 180 Query: 179 ADYVKPKQLSNEVLVSY-PVPVDRLDIYTQFLAPAGIVPRRHKTIETTDIMLQMVASGRG 237 V + ++ L++Y P R + F + AG+VP T D++ V G G Sbjct: 181 KAPVTLEDIAQYPLITYNPQFTGRKCVDAAF-SQAGLVPDFRLTAMDADVIKTYVERGLG 239 Query: 238 VA 239 V Sbjct: 240 VG 241 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.138 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 697,844 Number of extensions: 29730 Number of successful extensions: 142 Number of sequences better than 1.0e-08: 23 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 23 Length of query: 295 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 212 Effective length of database: 914,170 Effective search space: 193804040 Effective search space used: 193804040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)