BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4435.p (237 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981322|ref|YP_001355016.1| two components system response ... 211 2e-56 gi|152981180|ref|YP_001353103.1| osmolarity response regulator [... 160 7e-41 gi|152981303|ref|YP_001354918.1| transcriptional regulatory prot... 159 2e-40 gi|152980825|ref|YP_001354044.1| heavy metal response regulator ... 132 2e-32 gi|152983086|ref|YP_001353412.1| response regulator of copper se... 132 2e-32 >gi|152981322|ref|YP_001355016.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 246 Score = 211 bits (538), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 110/235 (46%), Positives = 157/235 (66%), Gaps = 9/235 (3%) Query: 5 ILIVDDDQKTRTLLKAYLEKNQYEVSLAHDGAAFLSEFQRVADELSLVILDVMLPDTDGF 64 ILIVDDD++ R LL +YLEKN SLA +G + ++ + + L++LD+MLP DG Sbjct: 7 ILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGS--VDLIVLDLMLPGEDGL 64 Query: 65 ALCKAVR--RKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHRRI 122 LC+ +R + +PV+MLTA ++ETDR++GLE+GADDY++KP++ REL ARI+++ RR Sbjct: 65 TLCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRRA 124 Query: 123 -----GIDSSAAPRYYRFAGFSLDTVERTLTDRAGQIVPLTGMDYQLLKYFVEHPGDVLD 177 + S ++ F + LDT R L D G +V L+G +Y+LL+ F++HP VL Sbjct: 125 RMLPANLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQRVLT 184 Query: 178 RNVLCEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFSADV 232 R+ L T+GRDA P DRS+D+ IS+LR RL D R+P IKT+R GYVFSA V Sbjct: 185 RDQLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVFSAAV 239 >gi|152981180|ref|YP_001353103.1| osmolarity response regulator [Janthinobacterium sp. Marseille] Length = 248 Score = 160 bits (405), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 91/214 (42%), Positives = 127/214 (59%), Gaps = 9/214 (4%) Query: 21 YLEKNQYEVSLAHDGAAFLSEFQRVADELSLVILDVMLPDTDGFALCKAVRRKSN-VPVI 79 YL + + V A + A + R + L++LD+MLP DG ++C+ +R + P+I Sbjct: 31 YLSEQGFNVVTAENAQAMNKLWLR--ERYDLLVLDLMLPGEDGLSICRRLRGAGDKTPII 88 Query: 80 MLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHRRIGIDS-----SAAPRYYR 134 MLTA ++ DR+VGLE+GADDY+AKP++PREL+ARI A+ RR+G + S P+ + Sbjct: 89 MLTAKGEDVDRIVGLEMGADDYLAKPFNPRELVARISAVLRRVGPEEIPGAPSETPQSFT 148 Query: 135 FAGFSLDTVERTLTDRAGQIVPLTGMDYQLLKYFVEHPGDVLDRNVLCEETRGRDAGPLD 194 F F LD RTL + + VPLT ++ +LK F H L R L E RGR+ D Sbjct: 149 FGEFVLDLGTRTL-KKNDETVPLTTGEFSVLKVFARHARQPLSREKLMELARGREYEVFD 207 Query: 195 RSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVF 228 RSLDVQIS+LR + P I+TV G GYVF Sbjct: 208 RSLDVQISRLRKLIEPDPSTPLYIQTVWGLGYVF 241 >gi|152981303|ref|YP_001354918.1| transcriptional regulatory protein OmpR [Janthinobacterium sp. Marseille] Length = 233 Score = 159 bits (401), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 91/231 (39%), Positives = 133/231 (57%), Gaps = 11/231 (4%) Query: 7 IVDDDQKTRTLLKAYLEKNQYEVSLAHDGAA----FLSEFQRVADELSLVILDVMLPDTD 62 +++DDQ+ +++ YL +N +EV+ H G A + ++V+LD+MLPD D Sbjct: 1 MIEDDQRLASMVATYLNQNGFEVT--HSGTASEGLQQLQQAAATQAFAIVLLDLMLPDAD 58 Query: 63 GFALCKAVRRKS----NVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAI 118 G +C+ +R ++ ++P++MLTA D DRVVGLELGADDYI KP+ PRELLAR++A+ Sbjct: 59 GLDVCRQIRGQTQPLASMPIVMLTAKGDPMDRVVGLELGADDYIPKPFEPRELLARLRAV 118 Query: 119 HRRIGIDSSAAPRYYRFAGFSLDTVERTLTDRAGQIVPLTGMDYQLLKYFVEHPGDVLDR 178 RR ++ R RF +D R + Q P+T + LL + G VL R Sbjct: 119 LRRQQGVATNNERVLRFGRLEIDLDARVIR-LDDQEKPVTSYQFNLLAAMADRAGRVLSR 177 Query: 179 NVLCEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFS 229 L + +G DRS+DV I +LR + D +QP I TVRGAGYVF+ Sbjct: 178 EQLMDVVKGEPLEAFDRSIDVHIGRLRAAIEDDPKQPKRIITVRGAGYVFA 228 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 132 bits (332), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/229 (37%), Positives = 130/229 (56%), Gaps = 13/229 (5%) Query: 4 KILIVDDDQKTRTLLKAYLEKNQYEVSLAHDGAAFLSEFQRVADELSLVILDVMLPDTDG 63 KIL+V+D+ K+ L+ L + + V A DGA L + + LVILDVMLP DG Sbjct: 2 KILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQ--LALQESYELVILDVMLPLLDG 59 Query: 64 FALCKAVRRKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHRRIG 123 + L + +R+ + PV+ LTA + DRV GLELGADDY+ KP+S EL+AR++ + RR Sbjct: 60 WQLLRELRKVRDTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRRGP 119 Query: 124 IDSSAAPRYYRFAGFSLDTVERTLTDRAGQIVPLTGMDYQLLKYFVEHPGDVLDRNVLCE 183 + S+ A +D ++R +T R G+ + LT ++ LL + G+VL R+++ Sbjct: 120 VRESS---LIEIADMQIDVMKRRVT-RNGERLDLTAKEFSLLHLLAQRRGEVLSRSLIAS 175 Query: 184 ETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPH---LIKTVRGAGYVFS 229 + + +DV I +LR +L+D PH LI+TVRG GYV Sbjct: 176 QVWDMNFDSDTNVVDVAIRRLRAKLDD----PHPRKLIQTVRGIGYVLE 220 >gi|152983086|ref|YP_001353412.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] Length = 230 Score = 132 bits (332), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 127/226 (56%), Gaps = 7/226 (3%) Query: 4 KILIVDDDQKTRTLLKAYLEKNQYEVSLAHDGAAFLSEFQRVADELSLVILDVMLPDTDG 63 K+LIV+D+ KT L+ L + + V A++G V L+ILDVMLPD DG Sbjct: 2 KLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLD--GHHLAVTGSYDLIILDVMLPDIDG 59 Query: 64 FALCKAVRRKSN-VPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHRRI 122 + + A+R N VP + LTA DRV GLELGADDY+ KP++ ELLAR++ + RR Sbjct: 60 WKILHALRSAGNSVPALFLTARDGVADRVKGLELGADDYMVKPFAFSELLARVRTLLRR- 118 Query: 123 GIDSSAAPRYYRFAGFSLDTVERTLTDRAGQIVPLTGMDYQLLKYFVEHPGDVLDRNVLC 182 G S R + + LD R T RAG+ + LT ++ LL++ V H G+VL R+++ Sbjct: 119 GNPSPLVDR-LQVSDLVLDLARRAAT-RAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIA 176 Query: 183 EETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVF 228 + + +DV I +LR +++D P LI T+RG GYV Sbjct: 177 SQIWDINFNSDTNVIDVAIRRLRAKMDD-DYDPKLISTIRGVGYVL 221 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.138 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 544,281 Number of extensions: 22416 Number of successful extensions: 182 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 143 Number of HSP's successfully gapped: 31 Length of query: 237 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 157 Effective length of database: 925,261 Effective search space: 145265977 Effective search space used: 145265977 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)