BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4434.p (506 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982389|ref|YP_001355015.1| two-component sensor histidine ... 183 2e-47 gi|152982747|ref|YP_001353102.1| two-component sensor kinase Env... 131 1e-31 gi|152982315|ref|YP_001354919.1| two component sensor histidine ... 109 3e-25 gi|152982447|ref|YP_001351748.1| two-component system sensor his... 79 8e-16 gi|152981014|ref|YP_001353510.1| two-component regulatory protei... 73 5e-14 >gi|152982389|ref|YP_001355015.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 434 Score = 183 bits (464), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 103/267 (38%), Positives = 157/267 (58%), Gaps = 5/267 (1%) Query: 239 LTILVVRWTTRPLAALADAAEAFGKGETVPRLPESGSREYVKTARAFSGMRERIKRYLED 298 +T + VR TRPLA LADAA+ G RLPE G E + A+AF+ M+ RI Y+ + Sbjct: 171 VTWVGVRLATRPLAQLADAADTLGPDLRASRLPEDGPLEVARAAKAFNAMQGRINTYMTE 230 Query: 299 RERLFVSISHDLRTPITRLKLRTELMDDDAMRTDFHDDLDELDMMVKGALQSVKD-SDIH 357 R ++ +ISHDL+TPITR+++R ++MDD R + DL E++++VK + + Sbjct: 231 RMQILAAISHDLQTPITRMRMRADMMDDSEQREKLNHDLKEMEVLVKEGVAYARTLHGTS 290 Query: 358 ENRTEVRLDALVLRMIRDARLGGHEIAFTPS-GINVMAKPLALKRAIGNLFDNALYYGQK 416 E + DAL+ ++ D G E+ G ++ +P AL+R + NL DNAL + + Sbjct: 291 EPPRAIDPDALLESLVFDYTDAGQELDLHGKVGHPIITRPNALRRVLINLIDNALKFSTQ 350 Query: 417 VEISIRPSPGAEGDLVEIEIRDHGPGVPEDAMRTLFQPYVRLEHGRASNSGGMGLGLGIS 476 VE+S+ S G EG I + D+GPG+PE+ + T+FQP+ R+E R ++GG GLGL I+ Sbjct: 351 VEVSV--SAGPEGK-TTILVLDNGPGIPEEDLETVFQPFYRVEASRNRDTGGTGLGLAIA 407 Query: 477 RNIVQAHGGELLLRNHPEGGLMATIIL 503 + + A L L N GGL A ++L Sbjct: 408 KQLTLAMNASLTLHNRATGGLEARLVL 434 >gi|152982747|ref|YP_001353102.1| two-component sensor kinase EnvZ [Janthinobacterium sp. Marseille] Length = 455 Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 108/321 (33%), Positives = 156/321 (48%), Gaps = 45/321 (14%) Query: 214 FLDSDNPLWL--DRLVLQG---------------LSLAAILLLTILVVRWTTRPLAALAD 256 F SD+ WL DR ++G LSL L+++ L+ +PLA L Sbjct: 137 FTISDDEYWLMLDRDRIEGSSGVQWLGWGAVTVLLSLLGALMISGLI----NQPLARLTA 192 Query: 257 AAEAFGKGETVPRLPESGSREYVKTARAFSGMRERIKRYLEDRERLFVSISHDLRTPITR 316 A A G+ LPE G E + +F+ M + + R DR + ISHDLRTP+ R Sbjct: 193 ATRAIATGQRPAPLPERGPTEIREANHSFNQMVDDLNRVESDRAVVLAGISHDLRTPLAR 252 Query: 317 LKLRTEL--MDDDAMRTDFHDDLDELDMMVKGALQSVKDSDIHENRTEVRLDALV----- 369 ++L EL + DA R DL+++D ++ L K SD + + + AL+ Sbjct: 253 MQLEVELAGLPADA-RAGMQSDLEQMDAIIGQFLDYAKPSD-SSHFQPIDMTALMHSAAQ 310 Query: 370 --LRMIRDARLGGHEIAFTPSGINVMAKPLALKRAIGNLFDNALYYGQ-----KVEISIR 422 LRM +D R+ + V+ + +KR + NL +NA YG+ VEI +R Sbjct: 311 EALRM-QDVRINSK----IDDKLVVLGNAIDIKRVVNNLIENARRYGKLPGNDYVEIDLR 365 Query: 423 PSPGAEGDLVEIEIRDHGPGVPEDAMRTLFQPYVRLEHGRASNSGGMGLGLGISRNIVQA 482 AEGD V IE+ DHG GVPE + L +P+ R++ R + G GLGL I IV+ Sbjct: 366 CQ--AEGDKVIIEVTDHGAGVPEAEIDRLLRPFTRMDSARG-QANGAGLGLAIVDRIVKR 422 Query: 483 HGGELLLRNHPEGGLMATIIL 503 H G+L L N GGL+ I L Sbjct: 423 HSGKLQLLNREGGGLVIHITL 443 >gi|152982315|ref|YP_001354919.1| two component sensor histidine kinase protein [Janthinobacterium sp. Marseille] Length = 427 Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 125/255 (49%), Gaps = 14/255 (5%) Query: 257 AAEAFGKGETVPRLPESGSREYVKTARAFSGMRERIKRYLEDRERLFVSISHDLRTPITR 316 + EA G G+ R+ G E + A +F+ RI+ ++ ++ L + SH+LR+P+ R Sbjct: 181 SVEALGAGQLSTRIKVEGKDEVGRLATSFNRSAARIEALVDAQKALLANASHELRSPLAR 240 Query: 317 LKLRTELMDDDA---MRTDFHDDLDELDMMVKGALQSVK---DSDIHENRTEVRLDALVL 370 +++ ELM DA MR + ++ ELD ++ L + + +D + + L ALV Sbjct: 241 IRMAVELMAADAQPEMRNELKRNIGELDQLIDEILLASRLDATADATQVFEPIDLTALVA 300 Query: 371 RMIRDARLGGHEIAFTPSGINVMAKPLALKRAIGNLFDNALYYGQKVEISIRPSPGAEGD 430 AR+ + + L+R + NL +NA YG I + S G+ Sbjct: 301 EEC--ARIDAQ---LETQSVEIPGDARLLRRMVRNLLENARRYGNGTAIDV--SLEKTGN 353 Query: 431 LVEIEIRDHGPGVPEDAMRTLFQPYVRLEHGRASNSGGMGLGLGISRNIVQAHGGELLLR 490 V +++ D GPGVP +F P+ RL G + GG+GLGL + + I +AHGGE++ Sbjct: 354 KVVLQVCDGGPGVPVAERENIFAPFYRLP-GASEREGGVGLGLSLVQQIARAHGGEVVCT 412 Query: 491 NHPEGGLMATIILPA 505 GG + LPA Sbjct: 413 GREGGGSCFKVTLPA 427 >gi|152982447|ref|YP_001351748.1| two-component system sensor histidine kinase ColS [Janthinobacterium sp. Marseille] Length = 414 Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 121/265 (45%), Gaps = 35/265 (13%) Query: 250 PLAALADAAEAFGKGETVPRLPESGSREYVKTARAFSGMRERIKRYLEDRERLFV-SISH 308 P+ ALA A E +P L + E ARAF+ + ++R+L D E+LF +SH Sbjct: 155 PVTALAAAVERNDAPSDLPSLDKEN--EIGILARAFAKRTDELQRFLAD-EKLFTGDVSH 211 Query: 309 DLRTPITRLKLRTELMDDDAMRTDFHDDLDELDMMVK------------GALQSVKDSDI 356 +LRTP+T + +EL ++T D DEL + + GAL + S Sbjct: 212 ELRTPLTIMLGASEL-----LKTKLADTPDELAVAERIRRVASEASERVGALLLLSQSPD 266 Query: 357 HENRTEVRLDALVLRMIRDAR--LGGH--EIAF-TPSGINVMAKPLALKRAIGNLFDNAL 411 +++ L L+ R I + L E+ F P V A+P AIGNL NA Sbjct: 267 MLGGSQLSLTHLIEREIERCQQLLADKPVELQFHAPQDAWVYARPELAGIAIGNLLRNAC 326 Query: 412 YYGQKVEISIRPSPGAEGDLVEIEIRDHGPGVPEDAMRTLFQPYVRLEHGRASNSGGMGL 471 Y +K + + S ++ I D+GPG+PE+ LF +VR G + G GL Sbjct: 327 QYTEKGSVKVWLSAD------KLIIEDNGPGIPENVRSRLFDRFVR---GHDNQHVGSGL 377 Query: 472 GLGISRNIVQAHGGELLLRNHPEGG 496 GL I + +V G E+ N GG Sbjct: 378 GLAIVKRVVDHMGWEIRYENPEAGG 402 >gi|152981014|ref|YP_001353510.1| two-component regulatory protein sensor kinase for high-affinity potassium transport system [Janthinobacterium sp. Marseille] Length = 908 Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 24/224 (10%) Query: 299 RERLFVSISHDLRTPITRLKLRTELMD---------DDAMRTDFHDDLDELDMMVKGALQ 349 R L +ISHDLRTP+T L +E + + H++ + +V L Sbjct: 671 RNSLLAAISHDLRTPLTALVGLSESLTRSKPELAAAQQELAHALHEEALRMGNLVTNLLD 730 Query: 350 --SVKDSDIHENRTEVRLDALVLRMIRDAR--LGGHEIA--FTPSGINVMAKPLALKRAI 403 ++ ++ N + + +V +R + LG H++ P V + ++R + Sbjct: 731 MARIQSGEVKLNLQWQQFEEVVGSSLRAVQSLLGRHQVHTRLAPGLPLVNFDAVLIERVL 790 Query: 404 GNLFDNALYY---GQKVEISIRPSPGAEGDLVEIEIRDHGPGVPEDAMRTLFQPYVRLEH 460 NL +NA Y G ++ I+ S G +++ + D+GPG+P +F+ + R E Sbjct: 791 CNLLENASKYTPAGSQITIAAELS----GQYLDVAVYDNGPGLPPGQEEAIFEKFTRGE- 845 Query: 461 GRASNSGGMGLGLGISRNIVQAHGGELLLRNHPEGGLMATIILP 504 R S + G+GLGL I R I++AH G + + P+GG LP Sbjct: 846 -RESATPGVGLGLAICRAIIEAHHGTIRGGHSPQGGAAIIFTLP 888 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,076,982 Number of extensions: 42881 Number of successful extensions: 219 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 209 Number of HSP's successfully gapped: 16 Length of query: 506 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 419 Effective length of database: 899,382 Effective search space: 376841058 Effective search space used: 376841058 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)