BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4432.p
         (154 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981833|ref|YP_001355188.1| hypothetical protein mma_3498 [...    78   2e-16

>gi|152981833|ref|YP_001355188.1| hypothetical protein mma_3498
           [Janthinobacterium sp. Marseille]
          Length = 142

 Score = 77.8 bits (190), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 77/132 (58%), Gaps = 5/132 (3%)

Query: 13  PGSRLAPLRTRWLWLLLAYVSLGIGIVALFIPGIPTTEFVLLSAWAASRGSPRLQRWLEQ 72
           P SRLA    + L+ L+  ++L +GI+ +F+PG+PTT FVLL+A   ++ SPR+ +W+ Q
Sbjct: 14  PRSRLA----KALYGLVGGIALALGIIGIFLPGLPTTPFVLLAAACFAKASPRVHQWMLQ 69

Query: 73  HRLFGPMIHNWRHGQVVARRAKISASLMMSLCLVIMLFTVK-RHWVIVLATLGMAVGAAW 131
           H+L GP++ NW   + +  R K  A   M L + I +++   R W+ V   +  A+GA  
Sbjct: 70  HQLIGPLLRNWEEHRSLTVRTKCIAIGSMLLMIAISIWSFSGRPWIQVSLLVLAAIGALT 129

Query: 132 MWSRPERIEADN 143
           +   P R +A  
Sbjct: 130 VLRIPTRPQAPQ 141


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.136    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 352,791
Number of extensions: 12577
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 78
Effective length of database: 940,049
Effective search space: 73323822
Effective search space used: 73323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)