BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4430.p (598 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 311 8e-86 gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis pro... 304 9e-84 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 293 2e-80 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 291 1e-79 gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (... 290 1e-79 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 311 bits (797), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 174/283 (61%), Positives = 223/283 (78%) Query: 316 GDLTLRLAEDGQDEVTQISRSFNKFVNQITGILQDVRRSSDTVKISSTEIATGNQDLSAR 375 GDLT + + +DE Q+ + + + I+ +VR ++T+ +S EIA GN DLS+R Sbjct: 232 GDLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSR 291 Query: 376 TEQQAGALEETASAMEQLTSTVQQNSENARRANELAGNASQIAAKGGEVVGNVVSTMEAI 435 TEQQA +LEETAS+ME+LTSTV+QN++NAR+AN+LA +AS++A KGG+VV VV TM +I Sbjct: 292 TEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSI 351 Query: 436 NASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAA 495 N SSR+I DII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AA Sbjct: 352 NESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAA 411 Query: 496 KEIKVLIDTSVSKVADGGVLVAQAGQTMEQIVSSIRDVSVIVSEIAHASGEQNGGIQEVN 555 KEIK LI SV KV G LVA+AG TM++IV+SIR V+ I+ EI AS EQ+ GI+++N Sbjct: 412 KEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQIN 471 Query: 556 LAITHIDEGTQQNAALVEQAAAAAKSLQDEAHRLSVLVGGFKM 598 AI +D TQQNA+LVE+AAAAA+S+QD+A +L +VG FK+ Sbjct: 472 QAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKL 514 >gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 549 Score = 304 bits (779), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 177/296 (59%), Positives = 234/296 (79%), Gaps = 1/296 (0%) Query: 304 VRRAMDNLS-SGNGDLTLRLAEDGQDEVTQISRSFNKFVNQITGILQDVRRSSDTVKISS 362 +R A+D S + +GDLT + + +DE+ + R+ + + I+ DV+ +D + +S Sbjct: 219 LRSAIDVASRAADGDLTGDIGKPSKDEIGDLMRALGGMNDGLKKIVNDVKAGTDFINTAS 278 Query: 363 TEIATGNQDLSARTEQQAGALEETASAMEQLTSTVQQNSENARRANELAGNASQIAAKGG 422 EIA GN DLS+RTEQQA +LEETAS+ME+LTSTV+QN+ENA++AN+LA +AS +AAKGG Sbjct: 279 AEIAHGNLDLSSRTEQQAASLEETASSMEELTSTVKQNAENAQQANQLAVSASDVAAKGG 338 Query: 423 EVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS 482 VV ++STM AIN+SSR+I DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+ Sbjct: 339 AVVKEMISTMGAINSSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAT 398 Query: 483 EVRSLAQRSAQAAKEIKVLIDTSVSKVADGGVLVAQAGQTMEQIVSSIRDVSVIVSEIAH 542 EVRSLAQRSA AAKEIK LI SVS V G LV++AG+TM+ +V+SIR V+ I++EI Sbjct: 399 EVRSLAQRSAAAAKEIKSLIGDSVSNVDAGSKLVSEAGKTMDDVVNSIRHVTDIMNEIMA 458 Query: 543 ASGEQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAAKSLQDEAHRLSVLVGGFKM 598 AS EQ+ GI++VN AI+ +D+ TQQNAALVE+AAAA++SL+D+A +L+ +V FK+ Sbjct: 459 ASQEQSSGIEQVNTAISQMDQVTQQNAALVEEAAAASQSLRDQADKLAQIVNVFKL 514 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 293 bits (750), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 170/284 (59%), Positives = 219/284 (77%) Query: 315 NGDLTLRLAEDGQDEVTQISRSFNKFVNQITGILQDVRRSSDTVKISSTEIATGNQDLSA 374 +GDLT + +DE Q+ ++ N + I+ VR +DT+ +S++IATGN DLS+ Sbjct: 228 DGDLTGTIVVTSKDETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSS 287 Query: 375 RTEQQAGALEETASAMEQLTSTVQQNSENARRANELAGNASQIAAKGGEVVGNVVSTMEA 434 RTE+QA +LEETAS+ME+LTSTV+QN++NAR++N+LA AS++A +GG VV VV TM + Sbjct: 288 RTEEQASSLEETASSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGS 347 Query: 435 INASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQA 494 IN S+ +I DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA A Sbjct: 348 INDSANKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASA 407 Query: 495 AKEIKVLIDTSVSKVADGGVLVAQAGQTMEQIVSSIRDVSVIVSEIAHASGEQNGGIQEV 554 AKEIK LID SV KV +G LV AG TM ++V S+R V+ I+ EI AS EQ GI+++ Sbjct: 408 AKEIKTLIDDSVEKVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQI 467 Query: 555 NLAITHIDEGTQQNAALVEQAAAAAKSLQDEAHRLSVLVGGFKM 598 N A+ +D+ TQQNAALVE+AAAAA+SLQD+A+ LS +V FK+ Sbjct: 468 NQAVMQMDQVTQQNAALVEEAAAAAESLQDQANNLSQVVSVFKL 511 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 291 bits (744), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 181/323 (56%), Positives = 231/323 (71%), Gaps = 10/323 (3%) Query: 276 LIALVLVALVAAGIMSLITTAVFLRLSRVRRAMDNLSSGNGDLTLRLAEDGQDEVTQISR 335 LIA V L I ++ AV L R+ D GDLT + + +DE Q+ + Sbjct: 199 LIAAVFAVLATRSITRPLSQAVVL----ARKVAD------GDLTGSIVVESKDETGQLLQ 248 Query: 336 SFNKFVNQITGILQDVRRSSDTVKISSTEIATGNQDLSARTEQQAGALEETASAMEQLTS 395 + + I+ VR +DT+ +S +IATGN DLS+RTEQQA +LEETAS+ME+LTS Sbjct: 249 ALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEETASSMEELTS 308 Query: 396 TVQQNSENARRANELAGNASQIAAKGGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQ 455 TV+QN+ENAR++N+LA +AS++A +GG VV VV TM IN S+++I DII VIDGIAFQ Sbjct: 309 TVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDIIGVIDGIAFQ 368 Query: 456 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKVLIDTSVSKVADGGVL 515 TNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEIK LI SV KV+ G L Sbjct: 369 TNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSVDKVSIGSRL 428 Query: 516 VAQAGQTMEQIVSSIRDVSVIVSEIAHASGEQNGGIQEVNLAITHIDEGTQQNAALVEQA 575 V AG TM ++V S++ V+ I+SEI AS EQ GI+++N A+ +D+ TQQNAALVE+A Sbjct: 429 VDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQVTQQNAALVEEA 488 Query: 576 AAAAKSLQDEAHRLSVLVGGFKM 598 AAAA+SLQ +A LS +VG FK+ Sbjct: 489 AAAAESLQGQASHLSQVVGVFKL 511 >gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 290 bits (743), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 169/284 (59%), Positives = 218/284 (76%) Query: 315 NGDLTLRLAEDGQDEVTQISRSFNKFVNQITGILQDVRRSSDTVKISSTEIATGNQDLSA 374 +GDLT ++ +DE Q+ ++ + GI+ +VR + T+ +S +IA+GN DLS+ Sbjct: 226 SGDLTSQINVKSKDETGQLLQALKDMNQSLIGIVDEVRSGTATMATASNQIASGNMDLSS 285 Query: 375 RTEQQAGALEETASAMEQLTSTVQQNSENARRANELAGNASQIAAKGGEVVGNVVSTMEA 434 RTE+QA +LEETAS+ME+LTSTV+QN++NAR+AN L+ +AS+IA KGG+VV VV TM Sbjct: 286 RTEEQASSLEETASSMEELTSTVKQNADNARQANSLSLSASEIAVKGGQVVSEVVVTMNG 345 Query: 435 INASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQA 494 IN S+++I DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA A Sbjct: 346 INDSAKKITDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAA 405 Query: 495 AKEIKVLIDTSVSKVADGGVLVAQAGQTMEQIVSSIRDVSVIVSEIAHASGEQNGGIQEV 554 AKEIK LID SV +V G LV QAG TM ++V S++ V+ I++EI AS EQ+ GI++V Sbjct: 406 AKEIKALIDDSVGRVDTGSKLVVQAGSTMTEVVDSVKRVTDIMAEIMAASQEQSAGIEQV 465 Query: 555 NLAITHIDEGTQQNAALVEQAAAAAKSLQDEAHRLSVLVGGFKM 598 N AI +D TQQNAALVE+AAAAA SL+D+A +L V FK+ Sbjct: 466 NQAIAQMDHVTQQNAALVEEAAAAAGSLKDQAVKLEQTVSVFKI 509 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.127 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,097,642 Number of extensions: 40584 Number of successful extensions: 271 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 205 Number of HSP's successfully gapped: 21 Length of query: 598 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 509 Effective length of database: 891,988 Effective search space: 454021892 Effective search space used: 454021892 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)