BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4429.p
         (228 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982693|ref|YP_001351727.1| GntR family transcriptional reg...   126   9e-31
gi|152982451|ref|YP_001355369.1| GntR family transcriptional reg...   112   1e-26
gi|152982557|ref|YP_001351913.1| GntR family transcriptional reg...   108   2e-25

>gi|152982693|ref|YP_001351727.1| GntR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 284

 Score =  126 bits (317), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 79/204 (38%), Positives = 113/204 (55%), Gaps = 7/204 (3%)

Query: 10  SSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIPDKG 69
           SS  IA+ I  +I A++L PG +L E+ LA ++ VSRT IR AL+ LA   +V +   +G
Sbjct: 9   SSIQIAARITESILAKQLAPGTRLGEQQLADLFGVSRTLIREALMRLATRGIVMVSARRG 68

Query: 70  AFVSKPTVEETRNIFFVRRTLEAAMVRQFVACATP---EDYARLDAHLEQEAQAVKEDNM 126
            FV +PT  E R  F  RR +E  ++R     A P       +L  H+ +E  A+  D++
Sbjct: 69  WFVIEPTASEAREAFEARRVIELGLLRH----ARPLSKHAIGQLREHIAREQAAIAGDDV 124

Query: 127 QVRSSLLSDFHILLARIVGNEVLTDILEKLAGRSALITMLYQSTRDAACSSDEHRAFIAA 186
             RS LL DFH+ L   +GN +L+D L  L  R+ L  ML QS+  A  S ++H   +AA
Sbjct: 125 GARSYLLGDFHVCLCECLGNNLLSDTLRDLTARTTLTAMLRQSSSQAVDSCEDHVHIVAA 184

Query: 187 ARAGDTERAVQLMEHHLLHVEQAL 210
             +GD + A +LM  HL  VE  L
Sbjct: 185 LESGDIDEAERLMLEHLQVVESTL 208


>gi|152982451|ref|YP_001355369.1| GntR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 220

 Score =  112 bits (281), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 110/212 (51%)

Query: 11  SDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIPDKGA 70
           +  I   I+  I  +RLPPG KL E  LA ++ VSRT IR AL+ L++++L+ + P + +
Sbjct: 3   TQTIVQTISGAIYERRLPPGTKLNERELAEIFGVSRTVIRQALIRLSQEELITISPKRAS 62

Query: 71  FVSKPTVEETRNIFFVRRTLEAAMVRQFVACATPEDYARLDAHLEQEAQAVKEDNMQVRS 130
            V+ P+ +E  +++ +   +E+ +V   +   TPE  A L  H  +E  A K ++  +  
Sbjct: 63  QVAHPSFQEAFDLYQILHVVESGVVDILMQTITPEQIAMLREHTAKEHAAFKAEDHDLAD 122

Query: 131 SLLSDFHILLARIVGNEVLTDILEKLAGRSALITMLYQSTRDAACSSDEHRAFIAAARAG 190
            L   FH LL   + NE L ++  +L  + ALIT LY+   D      EH A + +    
Sbjct: 123 KLGRGFHTLLISCLANEPLNNMHARLRRKEALITALYKVDFDYCHLRGEHIALVDSLETR 182

Query: 191 DTERAVQLMEHHLLHVEQALAFEPKSGPRKDL 222
           D+ RA QL+  H   V +   FE  S P  DL
Sbjct: 183 DSFRAKQLLASHNNLVIKGYRFEIGSAPDIDL 214


>gi|152982557|ref|YP_001351913.1| GntR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 236

 Score =  108 bits (270), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 103/201 (51%), Gaps = 3/201 (1%)

Query: 5   VPAPD---SSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKL 61
           +P+PD    +  I   +   + AQRL PG KL E  +A ++ V RT IR AL+ L++DKL
Sbjct: 1   MPSPDLATPTQRIVDAVTEAVLAQRLVPGTKLNEAEMADIFGVGRTVIRQALIRLSQDKL 60

Query: 62  VDLIPDKGAFVSKPTVEETRNIFFVRRTLEAAMVRQFVACATPEDYARLDAHLEQEAQAV 121
           V +  ++GA +++ +  E R  F V   LE A + +F+   T  D A+L  H+  ++ A 
Sbjct: 61  VTIEHNRGAHITELSDLEIRETFEVLAMLECAALEKFIKTITAFDIAKLRQHIAHQSGAH 120

Query: 122 KEDNMQVRSSLLSDFHILLARIVGNEVLTDILEKLAGRSALITMLYQSTRDAACSSDEHR 181
           +  ++     L  DFH+L+  +  N VL DI  KL  +  LIT  Y    D      +H 
Sbjct: 121 QHHDIDQEFRLGPDFHVLIVGLAHNRVLEDIHGKLTAQERLITSQYYGEFDHVHLCQDHS 180

Query: 182 AFIAAARAGDTERAVQLMEHH 202
             I    +GD  RA QL+  H
Sbjct: 181 QLIDLIESGDLARAQQLLIGH 201


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.131    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 418,753
Number of extensions: 14210
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 6
Length of query: 228
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 148
Effective length of database: 925,261
Effective search space: 136938628
Effective search space used: 136938628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)