BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4426.p
         (550 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979924|ref|YP_001352205.1| histidine ammonia-lyase [Janthi...  1001   0.0  

>gi|152979924|ref|YP_001352205.1| histidine ammonia-lyase
           [Janthinobacterium sp. Marseille]
          Length = 541

 Score = 1001 bits (2588), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/541 (88%), Positives = 511/541 (94%), Gaps = 1/541 (0%)

Query: 10  QTITIDGFTLTAAQVLSVARAPHLKVALAESSRAALKQSRDYIESTWMHDEAPMMYSFNT 69
           + ITIDGFTLTA QVL+VARAPHL V LA+SSRAALK+SRDYIE+TWMHDEAPMMYSFNT
Sbjct: 2   KNITIDGFTLTAQQVLAVARAPHLPVVLADSSRAALKESRDYIEATWMHDEAPMMYSFNT 61

Query: 70  GVGLLKDTRIKVEHIELFQTQMIRAHSAGIGEPFSEEVSRATMLLRANAFASNYSAPRVE 129
           GVGLLKDTRIKVEHIELFQTQMI+AH AG+GEPFSEEVSRATMLLRANAFASNYSAPRVE
Sbjct: 62  GVGLLKDTRIKVEHIELFQTQMIKAHCAGMGEPFSEEVSRATMLLRANAFASNYSAPRVE 121

Query: 130 VVDRLLAFINAGIHPIMPQKGSVGASGDLAPLAYLAAAIAGFDEAEVMYQGQRMRATQAI 189
           VVDRLLAF+NAGIHPIMPQKGSVGASGDLAPL+YLAAAIAGFDEAEVMYQGQRM A QAI
Sbjct: 122 VVDRLLAFLNAGIHPIMPQKGSVGASGDLAPLSYLAAAIAGFDEAEVMYQGQRMSAPQAI 181

Query: 190 EQAGIGPVKFDLKAKDASALINGCTASLAVAILAAHDARNLLTDACLSLGLTLEAMRAEM 249
            +AGIG VKFDLKAKDASALINGCTASLAVA+L AHDARNLLTDACLSLGLTLEAMRAEM
Sbjct: 182 TKAGIGAVKFDLKAKDASALINGCTASLAVAVLVAHDARNLLTDACLSLGLTLEAMRAEM 241

Query: 250 SAFDARIQQARPHAGQIKTAAVIRTLLNGSTRTTHDARAVQLPDELRRTDIPYTARIQDV 309
           +AFD RIQQARPHAGQIKTAAVIR LL+GSTRTTH+ARAVQ P+ELRRTDIPY+ARIQDV
Sbjct: 242 AAFDDRIQQARPHAGQIKTAAVIRKLLSGSTRTTHEARAVQFPEELRRTDIPYSARIQDV 301

Query: 310 YSLRCAPQVYGPVFDALDYIDTIIEKETNSATDNPLIFNKEDGEGFEIISGGNFHGQYLA 369
           YSLRC+PQVYGPVFDALDYID I++KE NSATDNPLIF+K+ G GFEIISGGNFHGQYLA
Sbjct: 302 YSLRCSPQVYGPVFDALDYIDNIVDKEINSATDNPLIFDKQGG-GFEIISGGNFHGQYLA 360

Query: 370 QAMDLLAMAITDLGSICERRIARLIDPTLSWGLPRNLMSGIRGVNTGYPVVQCSMSSLVM 429
           QAMDLLAMAITDLGSICERR+ARLIDPTLSWGLPRNLM+G+RGVNTGYPVVQCS+SSLVM
Sbjct: 361 QAMDLLAMAITDLGSICERRVARLIDPTLSWGLPRNLMTGVRGVNTGYPVVQCSLSSLVM 420

Query: 430 ENRTLCMPGSVDSIPSKGNSEDHISNSTWCARKAMTVVQNTQYIVGVEMLLAAQALTMTD 489
           ENRTLCMPGSVDSIP+KGNSEDH+SNSTWCARKA TVV NTQYI+GVEMLLAAQALTMT+
Sbjct: 421 ENRTLCMPGSVDSIPAKGNSEDHVSNSTWCARKAATVVANTQYIIGVEMLLAAQALTMTE 480

Query: 490 DLLKDFTLGQGTQAAYAEIRCQIPACLDGDRWFHDDVQLAHDFVVSGSVRNAVIAAIGDF 549
           DLL  F LGQGTQAAY EIR QIPACL+GDRWFH+D+ +A  FVVSGSVRNAV   IGDF
Sbjct: 481 DLLPGFVLGQGTQAAYQEIRRQIPACLEGDRWFHNDIVVAQSFVVSGSVRNAVSKKIGDF 540

Query: 550 L 550
           +
Sbjct: 541 V 541


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,151,173
Number of extensions: 44824
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 462
Effective length of database: 895,685
Effective search space: 413806470
Effective search space used: 413806470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)