BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4425.p (587 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 544 e-156 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 533 e-152 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 504 e-144 gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 494 e-141 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 473 e-134 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 544 bits (1402), Expect = e-156, Method: Compositional matrix adjust. Identities = 321/586 (54%), Positives = 403/586 (68%), Gaps = 21/586 (3%) Query: 3 VKNVKISVRLAVCFAILIAVMCLITGTAMKSLSGVSHSTSQIVDDRYVKISLVNEVSDNV 62 +KN+KI RLA+ F ++AV+ ++ A L + + + +DRY K + + D + Sbjct: 1 MKNLKIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDRYPKTVNAHIIKDTL 60 Query: 63 NSAARNLRNALLARNVEESNKYLSAGLANSSRTVEALGKLEKLINTPKGKEMFAALIAVR 122 N ARN+RNALL + + L S EAL KL++ I + KG+ AL R Sbjct: 61 NETARNMRNALLMTDAAQIKGELDTIEKGSVTIAEALDKLDRTIKSEKGRTYIKALTDAR 120 Query: 123 NAYSGPRDKLRELIKEQKKDEAIDYLFKEVIPRQDEYFAVLDKFVDYQKSLMDASVAQGK 182 ++ +DK L+ + + EA LF EV P Q EY LD+ V++Q +LM + Sbjct: 121 GRFTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLMHKAGEDAH 180 Query: 183 EISSSAVTLMLALSTIAIVLCALAAWLVTRSITRPLNEAVKVASAVAEGDLTVQIGQTSK 242 E+S++A L+ LS IA+++ A +L TRSITRPL++AV +A VA+GDLT I TSK Sbjct: 181 EVSANAQQLVGILSVIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIVVTSK 240 Query: 243 DETGMLLASLKTMNESLHRIVSEVRSGTDTINTASSEIATGNLDLSSRTEEQAGALEETA 302 DETG LL +L+ MN L RIV++VR GTDTI TASS+IATGNLDLSSRTEEQA +LEETA Sbjct: 241 DETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEETA 300 Query: 303 SAMEELTSTVKQNADNARQANQLAATASEVAVQGGSVVGQVVQTMGEINEASKKIVDIIS 362 S+MEELTSTVKQNADNARQ+NQLA TASEVAV+GG+VV QVV+TMG IN+++ KIVDII Sbjct: 301 SSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVDIIG 360 Query: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDSVT 422 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSASAAKEIK LIDDSV Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDDSVE 420 Query: 423 RVDNGSRLVEQAGSTMGEVVASVKRVTDVVAEISAASNEQSDGIEQINHAITQMDQVTQQ 482 +V+NGSRLV AG+TM EVV SV+RVTD++ EI+AAS EQ+DGIEQIN A+ QMDQVTQQ Sbjct: 421 KVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQVTQQ 480 Query: 483 NAALVEEAAAAAQSLQEQSSRLTATVSVFKLSSNDAGRAQAARKPVPKPTPAPTPAPHKP 542 NAALVEEAAAAA+SLQ+Q++ L+ VSVFKL +N +R P P PA Sbjct: 481 NAALVEEAAAAAESLQDQANNLSQVVSVFKLDANAVALQATSRVAAPASRPVSKPA---- 536 Query: 543 VVAAPKPVPTVPAPKALPAKPAAASATSAKAGSKPVADDGD-WEQF 587 + + + K + + A+A+ A DGD WEQF Sbjct: 537 -----QQIRSANVDKQIVRQRASAT-----------AGDGDEWEQF 566 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 533 bits (1372), Expect = e-152, Method: Compositional matrix adjust. Identities = 321/586 (54%), Positives = 399/586 (68%), Gaps = 16/586 (2%) Query: 3 VKNVKISVRLAVCFAILIAVMCLITGTAMKSLSGVSHSTSQIVDDRYVKISLVNEVSDNV 62 +KN+KI RL++ F ++ ++ ++ A + G++ + S++ DRY K L N + D++ Sbjct: 1 MKNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60 Query: 63 NSAARNLRNALLARNVEESNKYLSA-GLANSSRTVEALGKLEKLINTPKGKEMFAALIAV 121 N ARN+RNALL L+ G A S AL +LEK + + +G++ A L A Sbjct: 61 NQIARNMRNALLMTEKAAIQAELTQIGKATDSLN-NALVELEKTVRSERGRQTIAGLQAD 119 Query: 122 RNAYSGPRDKLRELIKEQKKDEAIDYLFKEVIPRQDEYFAVLDKFVDYQKSLMDASVAQG 181 R+ + +D +L KDEA+ LF EV P Q Y A +DK +DYQ LM S A+ Sbjct: 120 RSKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSGAEA 179 Query: 182 KEISSSAVTLMLALSTIAIVLCALAAWLVTRSITRPLNEAVKVASAVAEGDLTVQIGQTS 241 +S L+ S IA+++ A+ A L TRSITRPL++AV +A VA+GDLT I S Sbjct: 180 NAKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVVES 239 Query: 242 KDETGMLLASLKTMNESLHRIVSEVRSGTDTINTASSEIATGNLDLSSRTEEQAGALEET 301 KDETG LL +LK MNE L +IV++VR GTDTI +AS +IATGNLDLSSRTE+QA +LEET Sbjct: 240 KDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEET 299 Query: 302 ASAMEELTSTVKQNADNARQANQLAATASEVAVQGGSVVGQVVQTMGEINEASKKIVDII 361 AS+MEELTSTVKQNA+NARQ+NQLA +ASEVAV+GG+VV +VV TMGEIN+++KKIVDII Sbjct: 300 ASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDII 359 Query: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDSV 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIK LI DSV Sbjct: 360 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSV 419 Query: 422 TRVDNGSRLVEQAGSTMGEVVASVKRVTDVVAEISAASNEQSDGIEQINHAITQMDQVTQ 481 +V GSRLV+ AG+TM EVV SVKRVTD+++EI+AAS EQ+DGIEQIN A+ QMDQVTQ Sbjct: 420 DKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQVTQ 479 Query: 482 QNAALVEEAAAAAQSLQEQSSRLTATVSVFKLSSNDAGRAQAARKPVPKPTPAPTPAPHK 541 QNAALVEEAAAAA+SLQ Q+S L+ V VFKL G VP T AP + Sbjct: 480 QNAALVEEAAAAAESLQGQASHLSQVVGVFKLD----GHGTTVVNAVPTYT-----APEQ 530 Query: 542 PVVAAPKPVPTVPAPKALPAKPAAASATSAKAGSKPVADDGDWEQF 587 P VA + V K K P D +WEQF Sbjct: 531 PKVAGKAALHKV---KTTQQKIEDKEFARVPRNVVPAGD--EWEQF 571 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 504 bits (1298), Expect = e-144, Method: Compositional matrix adjust. Identities = 300/588 (51%), Positives = 388/588 (65%), Gaps = 32/588 (5%) Query: 5 NVKISVRLAVCFAILIAVMCLITGTAMKSLSGVSHSTSQIVDDRYVKISLVNEVSDNVNS 64 N+KI RL + F +++A+ I ++ L VS T +++ K +V++ + + Sbjct: 6 NMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVSDWA--AIT 63 Query: 65 AARNLRNALLARNVEESNKYLSAGLA--NSSRTVEALGKLEKLINTPKGKEMFAALIAVR 122 A R +A++ + + SA A +S +++E + KLE L+NT + KE++A ++ VR Sbjct: 64 KASIARTIGVAKSADPALAQFSAKFAADDSKQSMEIIQKLEPLLNTDQEKELYAKILDVR 123 Query: 123 NAYSGPRDKLRELIKEQKKDEAIDYLFKEVIPRQDEYFAVLDKFVDYQKSLMDASVAQGK 182 ++ R+ + +L E K+ EA Y +P D + +FV+ ++ MDA AQ Sbjct: 124 KSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEFVELERKQMDAGTAQLS 183 Query: 183 EISSSAVTLMLALSTIAIVLCALAAWLVTRSITRPLNEAVKVASAVAEGDLTVQIGQTSK 242 ++ +++ ++ LS + + AW +T ITRPL AV A VA GDLT I SK Sbjct: 184 DVEAASTRQLMLLSAMVLAFGIFCAWRLTIGITRPLKTAVDAARRVAGGDLTNDIKAESK 243 Query: 243 DETGMLLASLKTMNESLHRIVSEVRSGTDTINTASSEIATGNLDLSSRTEEQAGALEETA 302 DE G LLA+LK MN+ L RIV EVR GT+TI TAS+EIA GNLDLSSRTE+QA +LEETA Sbjct: 244 DECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQQASSLEETA 303 Query: 303 SAMEELTSTVKQNADNARQANQLAATASEVAVQGGSVVGQVVQTMGEINEASKKIVDIIS 362 S+MEELTSTVKQNADNARQANQLA +ASEVA++GG VV QVVQTM INE+S+KIVDIIS Sbjct: 304 SSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINESSRKIVDIIS 363 Query: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDSVT 422 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSASAAKEIKALI DSV Sbjct: 364 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKALIGDSVG 423 Query: 423 RVDNGSRLVEQAGSTMGEVVASVKRVTDVVAEISAASNEQSDGIEQINHAITQMDQVTQQ 482 +VD G++LV +AG+TM E+V S++RVTD++ EI+AAS EQS GIEQIN AI QMD VTQQ Sbjct: 424 KVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQAIGQMDHVTQQ 483 Query: 483 NAALVEEAAAAAQSLQEQSSRLTATVSVFKLSSNDAGRAQAARKPVPKPTP--APTPAPH 540 NA+LVEEAAAAA+S+Q+Q+ +L V FKL + AQ A P AP PA Sbjct: 484 NASLVEEAAAAAESMQDQARKLGQVVGAFKLDN-----AQEANPPRASGVTRLAPKPAAG 538 Query: 541 KPVVAAPKPVPTVPAPKALPAKPAAASATSAKAGSKPVADDGD-WEQF 587 +A P+P A ALPA GD WEQF Sbjct: 539 SAGLAVAAPLPQRRANGALPA--------------------GDEWEQF 566 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 494 bits (1273), Expect = e-141, Method: Compositional matrix adjust. Identities = 276/511 (54%), Positives = 358/511 (70%) Query: 3 VKNVKISVRLAVCFAILIAVMCLITGTAMKSLSGVSHSTSQIVDDRYVKISLVNEVSDNV 62 + N+KI +L + F ++ A++ +IT + L +++S I DRY K L N V V Sbjct: 4 IANMKIRQKLTLSFGVVFALLVVITLLSNIQLGQLNNSIKLISKDRYPKTILANSVQIEV 63 Query: 63 NSAARNLRNALLARNVEESNKYLSAGLANSSRTVEALGKLEKLINTPKGKEMFAALIAVR 122 N A NLR+ +L+ + + + +S A+ + E L +L + T + +A I R Sbjct: 64 NKIALNLRDIMLSSDPAKIKQLVSDTQASDKKMNEGLEQLRAVAQTEEDNRYVSAAIVAR 123 Query: 123 NAYSGPRDKLRELIKEQKKDEAIDYLFKEVIPRQDEYFAVLDKFVDYQKSLMDASVAQGK 182 + Y RD L +L ++ K EA YL + +P Q +YF LD DYQ SLM+ + Sbjct: 124 DQYVPARDTLLQLAQDGKTAEAKTYLDQVFMPVQVKYFIALDAMFDYQGSLMNVAGDAAS 183 Query: 183 EISSSAVTLMLALSTIAIVLCALAAWLVTRSITRPLNEAVKVASAVAEGDLTVQIGQTSK 242 S A T++ L+ I+++L W VTRSITRPLN AV VA VA+GDL+ + + Sbjct: 184 ATSVQARTIINILAGISLLLSIAVGWWVTRSITRPLNTAVGVARRVAQGDLSGPVFVKTT 243 Query: 243 DETGMLLASLKTMNESLHRIVSEVRSGTDTINTASSEIATGNLDLSSRTEEQAGALEETA 302 +E G L+A+LKTMN++LH IV++VR+GT TI AS EIA GN+DLSSRTE+QA +LEETA Sbjct: 244 NEVGQLMAALKTMNDNLHHIVTQVRNGTGTIANASGEIARGNMDLSSRTEQQASSLEETA 303 Query: 303 SAMEELTSTVKQNADNARQANQLAATASEVAVQGGSVVGQVVQTMGEINEASKKIVDIIS 362 SAMEELTSTV++NADNA+QANQLAA+A++VA QGGSVV +V+ TM IN +SKKI DI Sbjct: 304 SAMEELTSTVRENADNAQQANQLAASATKVARQGGSVVHEVIATMAAINTSSKKIADITG 363 Query: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDSVT 422 VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AA EIKALIDDSV Sbjct: 364 VIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAMEIKALIDDSVA 423 Query: 423 RVDNGSRLVEQAGSTMGEVVASVKRVTDVVAEISAASNEQSDGIEQINHAITQMDQVTQQ 482 +VDNGS+LV+QAG T+ EVV SV ++ +VA IS AS EQS GIEQ+ AI Q+D+ TQQ Sbjct: 424 KVDNGSKLVQQAGLTIDEVVTSVGSLSGIVAAISNASQEQSAGIEQVGQAIVQIDEGTQQ 483 Query: 483 NAALVEEAAAAAQSLQEQSSRLTATVSVFKL 513 NAALVE++AAAAQSL+EQ+ +L VS+FKL Sbjct: 484 NAALVEQSAAAAQSLREQADQLMQLVSIFKL 514 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 473 bits (1218), Expect = e-134, Method: Compositional matrix adjust. Identities = 298/592 (50%), Positives = 379/592 (64%), Gaps = 29/592 (4%) Query: 1 MNVKNVKISVRLAVCFAILIAVMCLITGTAMKSLSGVSHSTSQIVDDRYVKISLVNEVSD 60 M + N+KIS RL+ FA+L+ +M ++T + L V S + K L E Sbjct: 1 MKITNLKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTMLPKERLAQEWLS 60 Query: 61 NVN-SAARNLRNALLARNVEESNKYLSAGLANSS-RTVEALGKLEKLINTPKGKEMFAAL 118 V+ + AR L +A E + + +S R E ++E +I TP+ K +F L Sbjct: 61 AVDVNGARTLASA--KTTSAEDQAFFQKQMDKTSVRANELQKEIESMIKTPEDKRLFEEL 118 Query: 119 IAVRNAYSGPRDKLRELIKEQKKDEAIDYLFKEVIPRQDEYFAVLDKFVDYQKSLMDASV 178 + RNAY R + +L E K EA + ++++P + Y +D + +K L+D + Sbjct: 119 VVARNAYRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQNEKKLIDEA- 177 Query: 179 AQGKEISS---SAVTLMLALSTIAIVLCALAAWLVTRSITRPLNEAVKVASAVAEGDLTV 235 G I S S +L++ L A+ L AW + SITRPLN AV VA VA GDL+ Sbjct: 178 --GTSIQSAFLSGRSLLIGLLAAAVALGVFFAWRLAISITRPLNRAVTVARTVASGDLSA 235 Query: 236 QIGQTSKDETGMLLASLKTMNESLHRIVSEVRSGTDTINTASSEIATGNLDLSSRTEEQA 295 +I +S DETG L+ +LK M +SL++ VSEVRSGT+TI TAS +IA+GNLDLSSRTEEQA Sbjct: 236 KIEVSSNDETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTEEQA 295 Query: 296 GALEETASAMEELTSTVKQNADNARQANQLAATASEVAVQGGSVVGQVVQTMGEINEASK 355 +L ETA++M +LTSTV+QNADNARQAN LA +AS+VAV+GGSVV +VV TM INE+++ Sbjct: 296 SSLGETAASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASINESAR 355 Query: 356 KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKA 415 KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIK Sbjct: 356 KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKI 415 Query: 416 LIDDSVTRVDNGSRLVEQAGSTMGEVVASVKRVTDVVAEISAASNEQSDGIEQINHAITQ 475 LI DSV +V+ GS+LV +AGSTM E+V SVKRVTD++AEI AAS EQS GI+Q+N AI Q Sbjct: 416 LIGDSVGKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQAIGQ 475 Query: 476 MDQVTQQNAALVEEAAAAAQSLQEQSSRLTATVSVFKLSSNDAGRAQAARKPVPKPTPAP 535 MDQVTQQNAALVEEAAAAA+SLQ+Q+ L VS FKL N Sbjct: 476 MDQVTQQNAALVEEAAAAAESLQDQAGNLARVVSQFKLDGNQ------------------ 517 Query: 536 TPAPHKPVVAAPKPVPTVPAPKALPAKPAAASATSAKAGSKPVADDGDWEQF 587 PA + P T PA + AKP ++ A K A DWE+F Sbjct: 518 -PAFVSSLDDIPVVRNTTPAIRTQAAKPLLSNPVHAPKREKATAGADDWEEF 568 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.310 0.123 0.319 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 823,653 Number of extensions: 24873 Number of successful extensions: 240 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 155 Number of HSP's successfully gapped: 21 Length of query: 587 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 499 Effective length of database: 895,685 Effective search space: 446946815 Effective search space used: 446946815 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 132 (55.5 bits)