BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4424.p (485 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcr... 258 4e-70 gi|152982775|ref|YP_001354611.1| two-components system response ... 191 7e-50 gi|152983085|ref|YP_001353411.1| sensor kinase of copper sensing... 107 2e-24 gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing... 101 1e-22 gi|152983127|ref|YP_001354752.1| two-component sensor kinase [Ja... 99 4e-22 >gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcription regulator protein [Janthinobacterium sp. Marseille] Length = 544 Score = 258 bits (660), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 170/483 (35%), Positives = 276/483 (57%), Gaps = 30/483 (6%) Query: 10 NLRSQLVRWLLIPLTLLVALDAVSVYYNALEVADLAYDRSLLASTRALAERVSIVDGRVT 69 +L +++ W+L+PL LL L Y A +A+ +DR+L +A++V V+G+V Sbjct: 64 SLFGEILDWMLVPLLLLWPLSIAITYLVAKSIANEPFDRALEDKVTVVAQQVKEVNGKVV 123 Query: 70 ADVPYVALDSFETDTLGRIYYKVTGLDGELVSGYDDLPPVPANVKRSQAYPALVRFYQAD 129 + A D D + +YY+V G++V G ++P +P +V +A P ++ D Sbjct: 124 TRLTGAATDILHADDIDNVYYQVRNSFGDVVEGDMEIP-LPKDV---EAPPPWSTQFRYD 179 Query: 130 Y-HQQPIRIAALLQPVYDDSMRG-------IALIQVGETMEGRNGMTRKILFDTLWRQGT 181 + +RIA + ++ +AL+QV ET++ R+ + +I+ + + Sbjct: 180 FIRNTEVRIAYIYVDLHKTQTAPQLSIEPRLALVQVAETLDKRSQLVNQIIKGVIVPEFI 239 Query: 182 LVTVAALLVWFAVRFVLRPVMQLKGEVESRAPTDLSGFDPALVHKEMRPLVLAMNGYMGR 241 ++ +A +LVWFA+ LRP+++L+ + R P DLS D V +E+ PLV ++N + R Sbjct: 240 ILPIALVLVWFALTRGLRPLVELQQRIRERRPDDLSPIDSGYVPEEILPLVGSLNEMLER 299 Query: 242 LQALISGQRRFIADASHQLRTPLTVLKTQSELTLRELRREHLDAAELRELVQGMARTTDA 301 L I Q+RFIADA+HQ++TPL ++ QSEL LR+ D E+ + ++ +A+++ + Sbjct: 300 LSQSIKVQKRFIADAAHQMKTPLAGMRMQSELALRQ-----TDQVEIHKSLEQLAKSSKS 354 Query: 302 AVHLANRLLTLARAEHGAAEG-GTRPVSLTDAARQVALELSQQAVAREINLGFEE-EGDI 359 A + N+LL LARAE+ +P+ L++ AR E Q + ++I+LGFE+ + I Sbjct: 355 ATRMINQLLALARAENQTPTTRPLQPLELSELARDTVQEWVQTSFNKKIDLGFEQPDYHI 414 Query: 360 AIDANALLLHELMVNLLDNAIRYTPSGGQVTLRVRATSAPGQPTCALLEVEDNGPGIAPA 419 ++ +A++L EL+ NL+DNA+ YTP+GG T+RVRA + A LEVED GPGIAP Sbjct: 415 MVNGDAIMLRELLNNLIDNALNYTPAGGHATVRVRADE---EARLAYLEVEDTGPGIAPH 471 Query: 420 ERARVFEPFYRASATQHVNPGGTGLGLSIVREIAAMHHASV-TLDTPALGS----GLLVR 474 E R+FE FYR + N G+GLGL+IVREIA H A + L+ P + G L+R Sbjct: 472 EHKRIFERFYRILGS---NVEGSGLGLAIVREIAQQHGAEIDILNNPNCTNPKAPGCLMR 528 Query: 475 IAF 477 I Sbjct: 529 ITL 531 >gi|152982775|ref|YP_001354611.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 470 Score = 191 bits (486), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 151/456 (33%), Positives = 231/456 (50%), Gaps = 25/456 (5%) Query: 26 LVALDAVSVYYNALEVADLAYDRSLLASTRALAERVSIVDGRVTADVPYVALDSFETDTL 85 ++ +D V Y+ +A+ YD L R + V+ DG++ D+ A + D Sbjct: 29 ILLIDIVGSYFVVRHIANDVYDVELNEIAREMLLHVTRKDGQLGFDLSPDAERTLLLDKE 88 Query: 86 GRIYYKVTGLDGELVSGYDDLPPVPANVK--RSQAYPALVRFYQADYHQQPIRIAALL-Q 142 ++YY + DG+L++G +LP +K R AY Y Q +RIA L + Sbjct: 89 DQVYYAIHTTDGKLIAGDPNLP-AHQTIKSGRETAY------YDGILQGQDVRIALLRGK 141 Query: 143 PVYDDSMRGIALIQVGETMEGRNGMTRKILFDTLWRQGTLVTVAALLVWFAVRFVLRPVM 202 P+ + + +IQ+ ET R+ R +L + Q L+ +A +L+W V L P+ Sbjct: 142 PLLEPPAEAV-MIQIAETQVKRDRHERALLIQLILPQVLLILIAGILIWRGVAHGLSPLR 200 Query: 203 QLKGEVESRAPTDLSGFDPALVHKEMRPLVLAMNGYMGRLQALISGQRRFIADASHQLRT 262 +L+ E+ R+ DLS V E+ PLV A+N M R+ ++ Q RFIAD +HQLRT Sbjct: 201 KLQQELAMRSHLDLSPIAADNVPGEVEPLVGAVNDLMTRVDGVLGFQGRFIADTAHQLRT 260 Query: 263 PLTVLKTQSELTLRELRREHLDAAELRELVQGMARTTDAAVHLANRLLTLARAEHGAAEG 322 P+ LK +EL LRE D +++ + + + + L ++LL+LAR E Sbjct: 261 PVAGLKAHAELALRE-----TDPVQVKRALGHLYTSAERLSRLVSQLLSLARNEPNNVAV 315 Query: 323 GTRPVSLTDAARQVALELSQQAVAREINLGFEE-EGDIAIDANALLLHELMVNLLDNAIR 381 P L A + A E A ++I+LGFE E + ++ A + E++ NL+DNAIR Sbjct: 316 NFAPFDLNQLALRTAQEWVPLAYKKQIDLGFETAEQTVLLNGEAARVTEMINNLVDNAIR 375 Query: 382 YTPSGGQVTLRVRATSAPGQPTCALLEVEDNGPGIAPAERARVFEPFYRASATQHVNPGG 441 YTPSGG+VT+RV A L V D+G I ER R+FE F+R G Sbjct: 376 YTPSGGRVTVRVHKDE-----EGAHLVVSDDGTRIPIDERQRIFERFHRLLGNHE---EG 427 Query: 442 TGLGLSIVREIAAMHHASVTLDTPALGSGLLVRIAF 477 +GLGL+IV EIA +H+A +TL+ G G + F Sbjct: 428 SGLGLAIVHEIATLHNARITLEDDIDGVGNTFTVTF 463 >gi|152983085|ref|YP_001353411.1| sensor kinase of copper sensing two-component system [Janthinobacterium sp. Marseille] Length = 458 Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/277 (29%), Positives = 138/277 (49%), Gaps = 13/277 (4%) Query: 188 LLVWFAVRFVLRPVMQLKGEVESRAPTDLSGFDPA-LVHKEMRPLVLAMNGYMGRLQALI 246 +L W+A R L P+ + ++ ++ P V EM L + +N + RLQ I Sbjct: 174 MLGWWAARQGLSPLRTMAARAQAVTSQNMKERMPVDAVPTEMTDLAVKLNAMLDRLQNDI 233 Query: 247 SGQRRFIADASHQLRTPLTVLKTQSELTLRELRREHLDAAELRELVQGMARTTDAAVHLA 306 + F AD +H+LRTP++ + TQ+ + L + R AA+ R+ + A Sbjct: 234 ARLTEFSADLAHELRTPISNMLTQTHVVLNQSR----SAADYRDSLSSNAEELQRLGKTI 289 Query: 307 NRLLTLARAEHGAAEGGTRPVSLTDAARQVALELSQQAVAREINLGFEEEGDIAIDANAL 366 + +L LA+ E+G A +++ Q LE +A+A E + EGD + + L Sbjct: 290 SDMLFLAQTENGLALPSVEKLNMAQEC-QALLEF-YEALAEEKEVTLRCEGDAVVIGDRL 347 Query: 367 LLHELMVNLLDNAIRYTPSGGQVTLRVRATSAPGQPTCALLEVEDNGPGIAPAERARVFE 426 + + NLL NA+RYTPS G ++++++A A ++ VE++G I + +F+ Sbjct: 348 MFRRALNNLLSNALRYTPSHGTISIKIKAAQA-----GTVVTVENDGKEIPIEIQPHLFD 402 Query: 427 PFYRASATQHVNPGGT-GLGLSIVREIAAMHHASVTL 462 FYRA ++ + + GLGLSI R I H SV++ Sbjct: 403 RFYRADKSRKKSESDSAGLGLSITRAIMQAHGGSVSV 439 >gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing two-component system [Janthinobacterium sp. Marseille] Length = 480 Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 86/293 (29%), Positives = 148/293 (50%), Gaps = 15/293 (5%) Query: 172 LFDT-LWRQGTLVTVAALLV-WFAVRFVLRPVMQLKGEVESRAPTDLS-GFDPALVHKEM 228 +F T LW +V+V AL+V W AV++ RP+ ++ ++ + + L DP V E+ Sbjct: 178 MFKTILWWATLIVSVIALIVAWCAVQWGHRPIRKVSRDIRAIRSSRLDVRLDPTEVPIEL 237 Query: 229 RPLVLAMNGYMGRLQALISGQRRFIADASHQLRTPLTVLKTQSELTLRELRREHLDAAEL 288 L + N +GR++ + F AD +H+LRTP+T L Q+E+ L + R +AE Sbjct: 238 AELAASFNDMLGRIEDGFAKLANFSADIAHELRTPVTNLVMQTEVALSQSR----SSAEY 293 Query: 289 RELVQGMARTTDAAVHLANRLLTLARAEHGAAEGGTRPVSLTDAARQVALELSQQAVARE 348 RE++ + + + +L LA+ E+ +S+ AA L +A+A E Sbjct: 294 REILYSNLEEFERMSRMISDMLFLAQTENDPHNLHLSDISI--AAMIQDLFDYFEALAEE 351 Query: 349 INLGFEEEGDIA-IDANALLLHELMVNLLDNAIRYTPSGGQVTLRVRATSAPGQPTCALL 407 N+ EG+ A + A+ ++ + NL+ NAI+Y+ G V + + S Q T + Sbjct: 352 ANITLTLEGNAAPVKADREMMLRALSNLISNAIQYSAPGSTVIVHL---SQDKQVTT--V 406 Query: 408 EVEDNGPGIAPAERARVFEPFYRASATQHVNPGGTGLGLSIVREIAAMHHASV 460 VE+ IA + ++F+ F+R ++ G GLGL+IV+ IA H +V Sbjct: 407 SVENPAGQIAREDLPKLFDRFFRTDPSRKRKASGAGLGLAIVKSIAEAHGGTV 459 >gi|152983127|ref|YP_001354752.1| two-component sensor kinase [Janthinobacterium sp. Marseille] Length = 445 Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 86/281 (30%), Positives = 135/281 (48%), Gaps = 28/281 (9%) Query: 188 LLVWFAVRFVLRPVMQLKGEVESRAPTDLSGFDPALVHKEMRPLVLAMNGYMGRLQALIS 247 L +W + L P+ L ++ + DL+ KE+RP++ ++N +GR+ + + Sbjct: 165 LALWIGIGKGLGPLAALSKTLQKKNANDLAPIADQYASKELRPVIDSLNQMLGRVSSTLV 224 Query: 248 GQRRFIADASHQLRTPLTVLKTQ---SELTLRELRREHLDAAELRELVQGMARTTDAAVH 304 QR F A+H+LRTPLT++ T ++L+ L++AE +G+ R H Sbjct: 225 QQRAFTDGAAHELRTPLTIIGTHLQVAKLSTGTALEVSLNSAE-----EGVRRLN----H 275 Query: 305 LANRLLTLARAEHGAAEGGTRPVSLTDAARQVALELSQQ---AVAREINLGFEEEGDIAI 361 +++ LARA+ E VSL V EL ++ R + + F E+ D Sbjct: 276 TLEQMMALARADSVTVEEECDSVSL------VIEELVERLPTVSMRRLRIDFAEQ-DAGA 328 Query: 362 DANALLLHELMVNLLDNAIRYTPSGGQVTLRVRATSAPGQPTCALLEVEDNGPGIAPAER 421 A LLH + NLLDNA RY S G V L V T + C + V D+GPG+ + Sbjct: 329 KVPASLLHTAVRNLLDNAFRY--SMGMVLLSV--TFDNHKKLCR-ISVADSGPGLTEEQI 383 Query: 422 ARVFEPFYRASATQHVNPGGTGLGLSIVREIAAMHHASVTL 462 + V + F+R + H G+GLGLSIV I + + L Sbjct: 384 SVVSQRFWRGKTSTHTQD-GSGLGLSIVSAIVGRYGGDLIL 423 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,110,367 Number of extensions: 46559 Number of successful extensions: 276 Number of sequences better than 1.0e-08: 28 Number of HSP's gapped: 207 Number of HSP's successfully gapped: 28 Length of query: 485 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 398 Effective length of database: 899,382 Effective search space: 357954036 Effective search space used: 357954036 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)