BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4423.p (224 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981323|ref|YP_001354612.1| two components system response ... 203 6e-54 gi|152981350|ref|YP_001354553.1| two-components system response ... 203 8e-54 gi|152980825|ref|YP_001354044.1| heavy metal response regulator ... 166 1e-42 gi|152983086|ref|YP_001353412.1| response regulator of copper se... 166 1e-42 gi|152981360|ref|YP_001351713.1| two-components system response ... 161 4e-41 >gi|152981323|ref|YP_001354612.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 203 bits (517), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 107/224 (47%), Positives = 147/224 (65%), Gaps = 3/224 (1%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGL 60 MRIL+VED L+ L +A+ A +V+ NG DA L YAL++LD++LP+MDGL Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYSVDHVDNGEDAHRALANDIYALLLLDISLPKMDGL 60 Query: 61 EVLKRMRARGSRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 VL+R+R R SR PVLILTAR L DRV+GL++GADDY+ KPF+L E EARV+AL+RR Q Sbjct: 61 AVLRRLRERKSRLPVLILTARDTLDDRVAGLDLGADDYMTKPFDLPEFEARVRALIRRGQ 120 Query: 121 SQEAVTVACGALNFDTVSRTFTYGGELLALTPREHAVLEALIMRQGHTVPKDKLFQQVFS 180 + G L FD + Y + + L+ RE AV E L+ RQG V K+++ ++F Sbjct: 121 FDAGKMLTHGGLRFDLEAHRLFYNDQPVELSVRELAVFEVLLSRQGQVVTKEQMIDRLFG 180 Query: 181 LDDNASVDAIEIYIHRLRKKLEHDGPGRVGITTLRGLGYLLQAA 224 D+ +AIE+Y+HR RKKLE P + I T+RG+GYLL+ + Sbjct: 181 WGDDGGSNAIEVYVHRTRKKLE---PYNINIRTVRGMGYLLEKS 221 >gi|152981350|ref|YP_001354553.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 233 Score = 203 bits (516), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 108/222 (48%), Positives = 146/222 (65%), Gaps = 3/222 (1%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGL 60 MRILL ED L+ L +++R + +C NGA+ADS+L TQD+ L+ILDL LP+M GL Sbjct: 1 MRILLAEDDSVLADGLTRSLRQSGYATDCVKNGAEADSVLSTQDFDLLILDLGLPKMSGL 60 Query: 61 EVLKRMRARGSRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 EVL+R+RAR SR PVLILTA + RV GL++GADD++AKPF L ELEARV+AL RR Sbjct: 61 EVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGA 120 Query: 121 SQEAVTVACGALNFDTVSRTFTYGGELLALTPREHAVLEALIMRQGHTVPKDKLFQQVFS 180 + G L++D V R ++L L+ RE +LE L+ R G V K++L + Sbjct: 121 GGGPTVIKHGPLSYDQVGRIAYINDQMLDLSARELGLLEVLLQRSGRLVSKEQLVDHLCE 180 Query: 181 LDDNASVDAIEIYIHRLRKKLEHDGPGRVGITTLRGLGYLLQ 222 + S +AIE+Y+HRLRKK+E G + I T+RGLGY L+ Sbjct: 181 WSEEVSNNAIEVYVHRLRKKIEIGG---LRIATVRGLGYCLE 219 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 166 bits (420), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 90/222 (40%), Positives = 138/222 (62%), Gaps = 2/222 (0%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGL 60 M+ILLVED ++ +L K +R+A V+ A +GA+ L L + Y LVILD+ LP +DG Sbjct: 1 MKILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGW 60 Query: 61 EVLKRMRARGSRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 ++L+ +R + TPVL LTAR + DRV GL +GADDYL KPF EL ARV+ LLRR Sbjct: 61 QLLRELR-KVRDTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRRGP 119 Query: 121 SQEAVTVACGALNFDTVSRTFTYGGELLALTPREHAVLEALIMRQGHTVPKDKLFQQVFS 180 +E+ + + D + R T GE L LT +E ++L L R+G + + + QV+ Sbjct: 120 VRESSLIEIADMQIDVMKRRVTRNGERLDLTAKEFSLLHLLAQRRGEVLSRSLIASQVWD 179 Query: 181 LDDNASVDAIEIYIHRLRKKLEHDGPGRVGITTLRGLGYLLQ 222 ++ ++ + +++ I RLR KL+ P ++ I T+RG+GY+L+ Sbjct: 180 MNFDSDTNVVDVAIRRLRAKLDDPHPRKL-IQTVRGIGYVLE 220 >gi|152983086|ref|YP_001353412.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] Length = 230 Score = 166 bits (420), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 137/223 (61%), Gaps = 2/223 (0%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGL 60 M++L+VED ++ +L + + +A V+ A+NG D L +T Y L+ILD+ LP +DG Sbjct: 1 MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGSYDLIILDVMLPDIDGW 60 Query: 61 EVLKRMRARGSRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 ++L +R+ G+ P L LTAR G+ADRV GL +GADDY+ KPF EL ARV+ LLRR Sbjct: 61 KILHALRSAGNSVPALFLTARDGVADRVKGLELGADDYMVKPFAFSELLARVRTLLRRGN 120 Query: 121 SQEAVT-VACGALNFDTVSRTFTYGGELLALTPREHAVLEALIMRQGHTVPKDKLFQQVF 179 V + L D R T G+ L LT +E +LE L+ +G +P+ + Q++ Sbjct: 121 PSPLVDRLQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQIW 180 Query: 180 SLDDNASVDAIEIYIHRLRKKLEHDGPGRVGITTLRGLGYLLQ 222 ++ N+ + I++ I RLR K++ D ++ I+T+RG+GY+L+ Sbjct: 181 DINFNSDTNVIDVAIRRLRAKMDDDYDPKL-ISTIRGVGYVLE 222 >gi|152981360|ref|YP_001351713.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 227 Score = 161 bits (407), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 91/223 (40%), Positives = 137/223 (61%), Gaps = 4/223 (1%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGL 60 M+ILL+ED ++ +L + + + V+ A+NG D L LT DY ++LD+ LP DG+ Sbjct: 1 MKILLIEDEVKTVAYLQRGLTEQGCIVDVANNGIDGQHLALTGDYDAIVLDIMLPGRDGI 60 Query: 61 EVLKRMRARGSRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 EVL+ +R R TPV++LTARG + DR+ GL GADDYL KPF EL AR++AL RR + Sbjct: 61 EVLQALR-RQKSTPVIMLTARGEVDDRIHGLQTGADDYLVKPFSFLELLARLQALGRRGR 119 Query: 121 SQEAVTVACGALNFDTVSRTFTYGGELLALTPREHAVLEALIMRQGHTVPKDKLFQQVFS 180 QE+ + L+ D ++R G L LT +E A+L AL +G + K + + V+ Sbjct: 120 PQESTHIRIADLHIDLIARRAMRGVRRLDLTAKEFALLAALARHRGQVLSKTVIVEMVWD 179 Query: 181 LDDNASVDAIEIYIHRLRKKLEHDGPGRVGIT-TLRGLGYLLQ 222 ++ ++ + +E+ I RLR KL D P V + T+RG+GYLL+ Sbjct: 180 VNFESNTNVVEVAIKRLRAKL--DEPSEVKLLHTIRGMGYLLE 220 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.138 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 513,698 Number of extensions: 20216 Number of successful extensions: 166 Number of sequences better than 1.0e-08: 32 Number of HSP's gapped: 140 Number of HSP's successfully gapped: 32 Length of query: 224 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 144 Effective length of database: 925,261 Effective search space: 133237584 Effective search space used: 133237584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)