BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4422.p (324 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981270|ref|YP_001352981.1| tricarboxylate binding receptor... 124 6e-30 gi|152981073|ref|YP_001352084.1| tricarboxylate binding receptor... 72 6e-14 gi|152980012|ref|YP_001352130.1| tricarboxylate binding receptor... 69 5e-13 gi|152981044|ref|YP_001353399.1| tricarboxylate binding receptor... 66 3e-12 gi|152980943|ref|YP_001351791.1| tricarboxylate-binding receptor... 65 4e-12 >gi|152981270|ref|YP_001352981.1| tricarboxylate binding receptor [Janthinobacterium sp. Marseille] Length = 329 Score = 124 bits (312), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 80/297 (26%), Positives = 149/297 (50%), Gaps = 3/297 (1%) Query: 29 LECIVPAKPGGGMDASCKLLRR-VMQEQGQHEAFKLAYLPGGIGAVAWSSVVSHRRGGPQ 87 +E +V + PGG D + + + + V++++ + PGG G + + +V R+G Sbjct: 35 VEIVVGSVPGGSNDKTARAIEQTVVRKKLLSTTMTVVNKPGGGGNLQLNYLV-QRKGDAH 93 Query: 88 TLVAFSGGSLLGLAQGKYGRAEVGDVRWVAGIGIDHGMIAVRSDAPWRNLKQLLEAIRKD 147 L+ + L G D +A + D+ + V +D+P + K L++ ++KD Sbjct: 94 YLMVTTPTLLTNQLTGNSALG-YNDFTPIASVVDDYVVYVVNADSPIKTGKDLVDRLKKD 152 Query: 148 PTNTTIGLSGTVGSQDWLKMAMLVERAGMNARQFHFVALEGGGDSFAALQAGHVQVISGD 207 P + TIG S T+GS + + +L + G++ + VA +GGG++ L GH+ +++ Sbjct: 153 PRSITIGFSTTLGSHNHIAAGLLAKTVGVDPKGLKVVAFKGGGEALTTLLGGHIDLVTTA 212 Query: 208 ASEAAYFIAEGKVRILAVLSEKRLPGPLQDVPTAREQGYDVVWPIIRGFYMSPHTSDADY 267 A A + GK+R++AV S++RLPG + VPT +EQG ++VW R + A Sbjct: 213 AGNVAPHVESGKLRVVAVASDQRLPGVMAQVPTWKEQGVNLVWGNWRTIMGPKGLTQAQV 272 Query: 268 RRWVQYFEQALADPEFDRQRSIGGLQAFAMTGKPLSEYIAQTVARYRKQSQELGLVR 324 WV ++ + PE+ + + +TG L + +AQ A + ++GLV+ Sbjct: 273 NSWVGVLQKVVDSPEWKKDLELNYWSDSFVTGDALKQRLAQDYASMKVILTDIGLVK 329 >gi|152981073|ref|YP_001352084.1| tricarboxylate binding receptor [Janthinobacterium sp. Marseille] Length = 342 Score = 71.6 bits (174), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 62/304 (20%), Positives = 129/304 (42%), Gaps = 14/304 (4%) Query: 29 LECIVPAKPGGGMDASCKLLRRVM-QEQGQHEAFKLAYLPGGIGAVAWSSVVSHRRGGPQ 87 +E +VPA GGG D +L++ V+ + + E + GG GA + + + + + Sbjct: 41 VEFVVPAGTGGGADQMARLIQGVIIKNKLMKEPLIVVNKSGGAGAEGFLGIKNDKGDPHK 100 Query: 88 TLVAFSGGSLLGLAQGKYGRAEVGDVRWVAGIGIDHGMIAVRSDAPWRNLKQLLEAIRKD 147 ++ S +A G D+ VA + +D ++ ++ P+++ K+ ++A++ Sbjct: 101 IIITLSNLFTTPMATGVPFNWR--DMTPVAMLALDQFVLWTNAEQPYKSAKEYIDAVKAA 158 Query: 148 PTNTTIGLSGTVGSQDWLKMAMLVERAGMNARQFHFVALEGGGDSFAALQAGHVQVISGD 207 N + GT Q+ + + +E+A +F ++ +GGG+ L H+Q + Sbjct: 159 GPNK-FKMGGTGSKQEDQIITVGLEKA--TGTKFIYIPFKGGGEVAVQLVGNHLQSTVNN 215 Query: 208 ASEAAYFIAEGKVRILAVLSEKRLPGPLQ--------DVPTAREQGYDVVWPIIRGFYMS 259 EA GK++ V +R+P + D+PT +E G + ++RG +M Sbjct: 216 PIEAVSQWRAGKLKAQCVFDHERMPYKTKVTETQSWNDIPTCKEAGIPTDYTMLRGIFMP 275 Query: 260 PHTSDADYRRWVQYFEQALADPEFDRQRSIGGLQAFAMTGKPLSEYIAQTVARYRKQSQE 319 + +V F++ PE+ G TG ++ ++ Q+ Sbjct: 276 AGVTPDQLAFYVDLFKKVRDTPEWKDYMEKGAFNTTFKTGNDFKVWLEAAEKQHATLMQD 335 Query: 320 LGLV 323 G + Sbjct: 336 AGFM 339 >gi|152980012|ref|YP_001352130.1| tricarboxylate binding receptor [Janthinobacterium sp. Marseille] Length = 334 Score = 68.6 bits (166), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 62/334 (18%), Positives = 139/334 (41%), Gaps = 22/334 (6%) Query: 7 RSVGRPFLVACLLACAVPCALA---------LECIVPAKPGGGMDASCKLLRRVMQEQGQ 57 +++ R + L + CAL+ +E +VP GG D + ++ ++ + Sbjct: 3 KNIIRQPMKVGLFLTTMCCALSASAWEPTKPVELVVPFSAGGASDQMARSIQGIITKHNL 62 Query: 58 HEAFKLAYLPGGIGAVAWSSVVSHRRGGPQTLVAFSGGSLLGLAQGKYGRAEVGDVRWVA 117 + + G + +G P ++ S S+ D+ +A Sbjct: 63 MKQPIIVQNKAGASGAEGLLDLKAAKGDPNKIIVASS-SIYTTPLATNLPFNWKDLTPIA 121 Query: 118 GIGIDHGMIAVRSDAPWRNLKQLLEAIRKDPTNTTIGLSGTVGSQDWLKMAMLVERAGMN 177 I D ++ + A ++ ++ ++K P T + GT ++ + M++E+ Sbjct: 122 MIAQDAFVLWTNTQAGYKTPMAYIDDVKKKPE--TFKMGGTSSKREDHMITMMIEK--QT 177 Query: 178 ARQFHFVALEGGGDSFAALQAGHVQVISGDASEAAYFIAEGKVRILAVLSEKRLPGPLQ- 236 +F ++ +GGG++ L H+ + + SE+ G+ + L V S+KR+ + Sbjct: 178 GAKFLYIPYKGGGEAATQLSGNHINSDTNNPSESVSQWRAGEHQALCVFSDKRISYTAKV 237 Query: 237 -------DVPTAREQGYDVVWPIIRGFYMSPHTSDADYRRWVQYFEQALADPEFDRQRSI 289 D+PT +EQG +V + ++R F M + +V ++ +A PE+ Sbjct: 238 TATQGWSDIPTCKEQGLNVSYEMLRIFMMPGGVKPEQTQFYVDLLQKVVATPEWKTYLEK 297 Query: 290 GGLQAFAMTGKPLSEYIAQTVARYRKQSQELGLV 323 L+ +TG L+ ++ + +R+ ++ G + Sbjct: 298 NALKPEFVTGAQLNAFLTKDEQLHREIMKDAGFI 331 >gi|152981044|ref|YP_001353399.1| tricarboxylate binding receptor [Janthinobacterium sp. Marseille] Length = 321 Score = 65.9 bits (159), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 116/293 (39%), Gaps = 20/293 (6%) Query: 29 LECIVPAKPGGGMDASCKLLRRVMQEQGQHEAFKLAYLPGGIGAVAWSSVVSHRRGGPQT 88 + IVP PGGG DA R + Q + K + GA + P Sbjct: 29 VTLIVPFPPGGGTDA----FARPLAAQLTKQLGKSVIIDNRGGAGGTLGAGVAAKSAPDG 84 Query: 89 LVAFSGGSLLGLAQGKYGRAEVG---DVRWVAGIGIDHGMIAVRSD-APWRNLKQLLEAI 144 F G + +A Y + D + I +I V + P +NLK LL+ + Sbjct: 85 YTFFIGAAHHAIAPALYPKLTYDLQKDFIPITVIATPPQVIVVNTQRVPVQNLKGLLDYV 144 Query: 145 RKDPTNTTIGLSGTVGSQDWLKMAMLVERAGMNARQFHFVALEGGGDSFAALQAGHVQVI 204 RK+P G +G S +A + + N H + G G + L G + ++ Sbjct: 145 RKNPGKLNFGSAGNGTSH---HLAGELFKIQTNTFITH-IPYRGAGPALQDLIGGQLDMM 200 Query: 205 SGDASEAAYFIAEGKVRILAVLSEKRLPGPLQDVPTARE---QGYDV-VWPIIRGFYMSP 260 +A + G+++ LAV S KR PG DVPTA E GY+V W G + Sbjct: 201 FDGLGSSASHVKSGRIKALAVASAKRAPG-FPDVPTAAEAGVPGYEVSTW---YGLWAIK 256 Query: 261 HTSDADYRRWVQYFEQALADPEFDRQRSIGGLQAFAMTGKPLSEYIAQTVARY 313 T R + ++ALA PE + + G M+ + IA +AR+ Sbjct: 257 GTPPEVVERMTEEVKKALASPEIHQNWTSAGSDIPNMSQAEFTTMIASEIARW 309 >gi|152980943|ref|YP_001351791.1| tricarboxylate-binding receptor [Janthinobacterium sp. Marseille] Length = 334 Score = 65.5 bits (158), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/310 (21%), Positives = 133/310 (42%), Gaps = 27/310 (8%) Query: 14 LVACLLACAVPCAL----ALECIVPAKPGGGMDASCKLLRRVMQEQGQHEAFKLAYLPGG 69 +VA + CA A A+E ++P+ G G D +L+ ++ + + + GG Sbjct: 14 VVAATMLCAPAFAWEPTKAVEMVLPSGSGSGTDQMARLMSSIVVKHSLAKKPYIVTPKGG 73 Query: 70 IGAVAWSSVVSHRRGGP-QTLVAFSGGSLLGLAQGKYGRAEV----GDVRWVAGIGIDHG 124 G + G P + L++ S +L L A+V D+ VA + +D Sbjct: 74 AGGAEGFIDLKTSPGNPHKILISASHMYMLPLT------ADVPFTWKDMTPVANLVMDEF 127 Query: 125 MIAVRSDAPWRNLKQLLEAIRKDPTNTTIGLSGTVGSQDWLKMAMLVERAGMNARQFHFV 184 ++ V + +P++ +LL A + P G +G+ +D L A + + AG+ +F+++ Sbjct: 128 ILWVNAASPYKTAGELLAAAKAKPGQVRAGGAGS-KREDNLLFAAVEQAAGV---KFNYI 183 Query: 185 ALEGGGDSFAALQAGHVQVISGDASEAAYFIAEGKVRILAVLSEKRLPGPLQ-------- 236 +GGGD L H+ V + EA G++R L V +K + + Sbjct: 184 PYKGGGDVATQLVGNHIDVSVNNPVEAVSQWRAGQLRPLCVFDDKPMAQTDKVTETESWS 243 Query: 237 DVPTAREQGYDVVWPIIRGFYMSPHTSDADYRRWVQYFEQALADPEFDRQRSIGGLQAFA 296 +PT + G +V + + R ++ +V ++ +A PE+ + + Sbjct: 244 SIPTCKSAGLNVTYLMQRSVFLPSGVKPDQVAYYVDQMKKIVATPEWKEFSNRNAFKDAF 303 Query: 297 MTGKPLSEYI 306 MTG L +++ Sbjct: 304 MTGPTLQKFL 313 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.137 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 805,970 Number of extensions: 35389 Number of successful extensions: 104 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 98 Number of HSP's successfully gapped: 5 Length of query: 324 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 241 Effective length of database: 914,170 Effective search space: 220314970 Effective search space used: 220314970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)