BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4420.p (603 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979941|ref|YP_001352418.1| iron(III) ABC-type transport sy... 76 5e-15 gi|152980950|ref|YP_001352503.1| sulfate ABC transporter, permea... 67 3e-12 gi|152980225|ref|YP_001354281.1| sulfate transport system permea... 66 7e-12 gi|152981300|ref|YP_001355347.1| molybdate transport system perm... 59 6e-10 gi|152979981|ref|YP_001354795.1| spermidine/putrescine transport... 56 5e-09 >gi|152979941|ref|YP_001352418.1| iron(III) ABC-type transport system permease protein [Janthinobacterium sp. Marseille] Length = 565 Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 112/477 (23%), Positives = 202/477 (42%), Gaps = 62/477 (12%) Query: 80 NGLTLATGLALIAVPLGGMLAFLMVRTDLPGRSLIAPALMVPIFVSPMVIGFGYVVSM-- 137 N L LA +A++ LG A+L+ + PG+ AL++P+ + V+ + Y + Sbjct: 82 NSLLLAMIVAVLTAVLGIGTAWLVAVFNFPGKKFFEWALILPLAMPAYVVAYAYTDFLQF 141 Query: 138 -GPVGFYTVWVKNLLSVFGFEGDPW---NIYSFTSIVIIAGLTHVPHVYLYASAALKSLG 193 GPV L ++FG++G + I S ++ P+VYL A A Sbjct: 142 TGPVQ------SGLRALFGWQGPTYWFPQIRSVGGAGLLFAFVLYPYVYLLARNAFIERS 195 Query: 194 SDVEEAARVAGASPLQVALNVSLPMITPALAYSGVLVFFLGFEVFGLVLVLGDPEGHLVL 253 + +AAR GA P Q VSLP+ PA L +G V G P L Sbjct: 196 PRMWDAARTLGAGPWQAFCQVSLPLARPAAVAGIALALMETLADYGAVAYFGVPT----L 251 Query: 254 PTYLYK----LTNKLGTPSYHLMAAVAVCLVAVTMPLVMLQRWLLRSANKYVAIKGKGAR 309 T +YK +++ + A +A L+ M L+++++ R +Y A+ + A Sbjct: 252 TTGIYKSWYIFSDR------NAAAQIAGVLLLAVMGLMLMEQ-KSRGRARYYAVGARSAA 304 Query: 310 Q-KALPLGKWRWVAFTLIAGWLLFTVVIPLSGIGLRTFVSHWGDGVSLLEVLTFENLLNV 368 Q L G+ W+A A VV+ L W + EV++F Sbjct: 305 QLPTLLQGRQGWMATAFCA----LPVVLGFFAPLLILLHLLWQE-----EVISFSARYID 355 Query: 369 WDQPSLVRGIINTVLIGVIGGALAVACYTAIALAMHRKQDGVTRFLDYSVLVPRAVPGLL 428 W Q NT+++G + +A+A +A A + + V + A+PG Sbjct: 356 WLQ--------NTIILGAVTALIAIAICVLMAYAARVTNSKLQAVCNRIVSMGYAIPG-- 405 Query: 429 AGLSFLWVFLFVPSLLDSALKGIDNPIALWLVESFIPALRGLRSTIFSVWLAYSVVWMAY 488 + + V + +P L +DN W + + + L ++ ++ AY V ++A Sbjct: 406 ---AVIAVGILIP------LAYLDN----WNAQHGVALV--LSGSVIALVYAYLVRFLAV 450 Query: 489 GLRLINTALLQVGPELEEAARAVGASRSRVTRDVTIPLVRYGLVGAWLMVFLIFERE 545 + + LL++ P ++ +AR++G + + +PL+ ++ A L+VF+ +E Sbjct: 451 SFQTVQAGLLKITPSMDASARSLGHGLGAMLMRIHVPLLWRSVLTAGLLVFVDVVKE 507 >gi|152980950|ref|YP_001352503.1| sulfate ABC transporter, permease protein [Janthinobacterium sp. Marseille] Length = 302 Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 88/314 (28%), Positives = 136/314 (43%), Gaps = 39/314 (12%) Query: 6 TLARSEQALPARRFRLNWPRGLVVLLT----ALAIFVPLLLIFYQSFLSAPFFAPVKELT 61 +LAR+ +PA W R L++++ L +FVPL A FA + Sbjct: 15 SLARAP-CVPAATLEPTWIRTLLIVVALAFLTLFLFVPL----------ASVFAEALKKG 63 Query: 62 FDSYRFIFDDPDFRQAFINGLTLATGLALIAVPL----GGMLAFLMVRTDLPGRSLIAPA 117 +D+Y + D A LTL T A IAVPL G ++ + + D G+S++ Sbjct: 64 WDAYIAAILEEDAVSAI--KLTLLT--AAIAVPLNLVFGVAASWCIAKFDFRGKSILLTL 119 Query: 118 LMVPIFVSPMVIGFGYVVSMGPVGFYTVWVKNLLSVFGFEGDPWNIYSFTSIVIIAGLTH 177 + +P VSP++ G YV+ G G++ W++ E + +++ IV+ Sbjct: 120 IDLPFSVSPVISGLIYVLLFGAQGWFGGWLQ--------EHNIKILFAVPGIVLATIFVT 171 Query: 178 VPHVYLYASAALKSLGSDVEEAARVAGASPLQVALNVSLPMITPALAYSGVLVFFLGFEV 237 P V ++S GS+ EEAA V GAS + +V+LP I L Y +L Sbjct: 172 FPFVARELIPLMQSQGSEEEEAALVLGASGWKTFWHVTLPNIKWGLLYGVILCNARAMGE 231 Query: 238 FGLVLVLGDPEGHLVLPTYLYKLTNKLGTPSYHLMAAVAVC-----LVAVTMPLVMLQRW 292 FG V V+ GH+ T L ++ Y AA AV L VT+ L W Sbjct: 232 FGAVSVVS---GHIRGQTNTIPLQVEILYNEYQFSAAFAVASLLAMLALVTLALKSFIEW 288 Query: 293 LLRSANKYVAIKGK 306 LR ++ +G Sbjct: 289 RLRDTHEQFQEQGS 302 >gi|152980225|ref|YP_001354281.1| sulfate transport system permease protein [Janthinobacterium sp. Marseille] Length = 260 Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 97/224 (43%), Gaps = 11/224 (4%) Query: 57 VKELTFDSYRFIFDDPDFRQAFINGLTLATGLALIAVPLGGMLAFLMVRTDLPGRSLIAP 116 V +++D Y F D Q++ + A +I +G +LA+++ R D PGR LI Sbjct: 25 VSGMSWDQYWFAITDARVLQSYKITIQGAFYSTIIVTFIGFLLAWIITRYDFPGRRLIDS 84 Query: 117 ALMVPIFVSPMVIGFGYVVSMGPVGFYTVWVKNLLSVFGFEGDPWNIYSFTSIVIIAGLT 176 + +P + V G P G W+ +FG + Y+F IV+ T Sbjct: 85 LVDLPFALPTSVAGITLSALFIPTG----WLGQWFEIFGIKIS----YAFPGIVVAMTFT 136 Query: 177 HVPHVYLYASAALKSLGSDVEEAARVAGASPLQVALNVSLPMITPALAYSGVLVFFLGFE 236 +P + L+ + ++EEAA + GA+ Q+ V LP + PAL F Sbjct: 137 SLPFIVRSVQPVLEDMEKELEEAALMLGANKWQIFWRVILPTLIPALITGSSQAFIRSLG 196 Query: 237 VFGLVLVLGDPEGHLVLPTYLYKLTNKLGTPSYHLMAAVAVCLV 280 FG V+++ G++ T + L + Y+ AA A+ V Sbjct: 197 EFGAVIMIA---GNIPFETEVTSLMLFVRLQEYNYPAAAAIASV 237 >gi|152981300|ref|YP_001355347.1| molybdate transport system permease protein [Janthinobacterium sp. Marseille] Length = 224 Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 10/209 (4%) Query: 68 IFDDPDFRQAFINGLTLATGLALIAVPLGGMLAFLMVRTDLPGRSLIAPALMVPIFVSPM 127 +F DP+ A + L LA+ +I + +G LA+ + RT +S + + +PI + P Sbjct: 1 MFTDPNI-GAIVLTLKLASLTTIILLLIGTPLAWWLARTRSWLKSPVGAFVALPIVLPPT 59 Query: 128 VIGFGYVVSMGPVGFYTVWVKNLLSVFGFEGDPWNIYSFTSIVIIAGLTHVPHVYLYASA 187 VIGF +V++GP G V L GF P +SFT +V+ + +P V Sbjct: 60 VIGFYLLVALGPNG----PVGQLTQAMGFGTLP---FSFTGLVVGSVFYSMPFVVQPIQN 112 Query: 188 ALKSLGSDVEEAARVAGASPLQVALNVSLPMITPALAYSGVLVFFLGFEVFGLVLVLGD- 246 A +++G E A ASPL +V+LP+ P + V+ F FG+VL++G Sbjct: 113 AFEAMGERPLEVAATLRASPLDTFFSVTLPLAKPGYLTAIVMGFAHTVGEFGVVLMIGGN 172 Query: 247 -PEGHLVLPTYLYKLTNKLGTPSYHLMAA 274 P ++ +Y L H +AA Sbjct: 173 IPNQTRMISVQIYDHVEALEYAQAHWLAA 201 >gi|152979981|ref|YP_001354795.1| spermidine/putrescine transport system permease protein [Janthinobacterium sp. Marseille] Length = 321 Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/196 (25%), Positives = 94/196 (47%), Gaps = 5/196 (2%) Query: 59 ELTFDSYRFIFDDPDFRQAFINGLTLATGLALIAVPLGGMLAFLMVRTDLPGRSLIAPAL 118 +LT +S+ F D + F+ L A L+ + + LA L+ R+ R+L+ + Sbjct: 82 DLTLESFTPFFTDFIYTAIFLKSLLFAVITTLVCLTMAYPLALLIARSPQKWRNLLVLLV 141 Query: 119 MVPIFVSPMVIGFGYVVSMGPVGFYTVWVKNLLSVFGFEGDPWNIYSFTSIVIIAGL--T 176 ++P + + ++ + +++ +GP T + +L VFGFE P + +++ +I GL Sbjct: 142 ILPFWSNFLIRIYAWMILLGPQSALTRGLNAVLDVFGFE--PVTLL-YSAFAVIVGLVYV 198 Query: 177 HVPHVYLYASAALKSLGSDVEEAARVAGASPLQVALNVSLPMITPALAYSGVLVFFLGFE 236 H+P + L A L+ + +AA+ GA Q V+ P+ P + LVF Sbjct: 199 HLPFMVLPLYANLEKHDPALLDAAQDLGAGKWQTFWRVTFPLSLPGIYAGAALVFIPALG 258 Query: 237 VFGLVLVLGDPEGHLV 252 +F + +LG G ++ Sbjct: 259 IFAVSDILGGTGGIMI 274 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.142 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,349,451 Number of extensions: 55309 Number of successful extensions: 287 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 279 Number of HSP's successfully gapped: 8 Length of query: 603 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 514 Effective length of database: 891,988 Effective search space: 458481832 Effective search space used: 458481832 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 132 (55.5 bits)