BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4419.p (362 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 227 1e-60 gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport sy... 205 4e-54 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 204 8e-54 gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 158 4e-40 gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPa... 150 8e-38 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 227 bits (578), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 131/335 (39%), Positives = 192/335 (57%), Gaps = 16/335 (4%) Query: 1 MTELSVNDLHLDYGTGASANPILKGVSMQLQRGEVVALLGPSGSGKTTLLRAVAGLESPK 60 M L + +L +G N ++ +S+ ++ GE LLGPSG GKTTLLR +AG + P Sbjct: 1 MALLEIRNLTRRFGD----NTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPD 56 Query: 61 AGTIDIGSRRVFDGARQFEMPAEERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSAEI 120 AG I + DG +P E+R + VFQ+YAL+PH TV N+A+ L++ TP AEI Sbjct: 57 AGQI------LLDGVDLTGVPPEQRPVRTVFQNYALFPHMTVGGNIAFPLEMANTPKAEI 110 Query: 121 AKRVKEVLSQLGLGHLGERYPHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLRE 180 K+V E L + L RYPH+LSGGQ+QRV+IARALV P+++LLDEPLS LDA+LRE Sbjct: 111 QKKVDEALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLRE 170 Query: 181 EARAFLRELIVRLGLSALMVTHDQGEAMAISDRILLLNNGRIEQQGTPQSMYQTPNTLFT 240 + + L L +G++ + VTHDQ EA+A+S RI ++N G++EQ P +Y P + F Sbjct: 171 QMQIELINLQKEVGITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSYPRSRFV 230 Query: 241 AEFMGSNNKLAAEVLSREGERVTLKLDGGTAVATLRGRDDAKPGEQLTGIIRVEQVRISG 300 A+F+G+ N V +G + L + G AV G + T +R E+ ++S Sbjct: 231 ADFIGTCNLFDGVVTQIDGNMMWLDVPGMGAVKAFTA-PSVTVGSKGTIALRPEKTQVSA 289 Query: 301 E-----QTDNAIRLPLSTCMYLGDRWECLFKVEGG 330 E +N + +Y+G + + EGG Sbjct: 290 EIVRGVPDENHFDGYVKELLYMGGVTVYIVETEGG 324 >gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 363 Score = 205 bits (521), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 108/243 (44%), Positives = 162/243 (66%), Gaps = 4/243 (1%) Query: 3 ELSVNDLHLDYGTGASANPILKGVSMQLQRGEVVALLGPSGSGKTTLLRAVAGLESPKAG 62 L + + + Y G+ + I+ +S LQRGE+ LLG SG GKTT+LRA+AG ES AG Sbjct: 10 HLQLETIRVGYQLGSHMHEIVHSLSFALQRGEIGCLLGQSGCGKTTVLRAIAGFESLIAG 69 Query: 63 TIDIGSRRVFDGARQFEMPAEERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSAEIAK 122 I +G + + A+ +P E R++G+VFQ YAL+PH +V+DN+ +GL RK +AE Sbjct: 70 RITLGGKEL-SNAQHTTVP-EARHVGVVFQDYALFPHLSVSDNIGFGL--RKLAAAERNG 125 Query: 123 RVKEVLSQLGLGHLGERYPHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLREEA 182 R+ ++L+ +GL +++PH+LSGGQQQRVA+ARAL P ++LLDEP SNLD LRE Sbjct: 126 RINKLLALVGLQAQEKKFPHELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERL 185 Query: 183 RAFLRELIVRLGLSALMVTHDQGEAMAISDRILLLNNGRIEQQGTPQSMYQTPNTLFTAE 242 + +R+++ +G +A++VTHDQ EA AI+D+I ++ +G I Q ++Y P F A+ Sbjct: 186 ASEVRDILKEVGTTAVLVTHDQHEAFAIADQIGVMQDGVIVQWDQAYNLYHRPANRFVAD 245 Query: 243 FMG 245 F+G Sbjct: 246 FIG 248 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 204 bits (518), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 108/255 (42%), Positives = 158/255 (61%), Gaps = 14/255 (5%) Query: 4 LSVNDLHLDYGTGASANPILKGVSMQLQRGEVVALLGPSGSGKTTLLRAVAGLESPKAGT 63 + V ++ +G + N VS+ GE+ ALLGPSG GKTTLLR +AGLE P G Sbjct: 3 IEVKNIQKQFGNFVALN----NVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQ 58 Query: 64 IDIGSRRVFDGARQFEMPAEERNLGLVFQSYALWPHKTVADNVAYGLKLR----KTPSAE 119 + + DG ER +G VFQ YAL+ H TV +N+A+GL++R + ++ Sbjct: 59 V------LLDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESQ 112 Query: 120 IAKRVKEVLSQLGLGHLGERYPHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLR 179 I ++V ++L + L L +RYP QLSGGQ+QR+A+ARAL P+V+LLDEP LDAK+R Sbjct: 113 IKEKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVR 172 Query: 180 EEARAFLRELIVRLGLSALMVTHDQGEAMAISDRILLLNNGRIEQQGTPQSMYQTPNTLF 239 +E R +LR L L ++++ VTHDQ EA+ ++D+I+L+N G +EQ G P+ +Y P + F Sbjct: 173 KELRRWLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPF 232 Query: 240 TAEFMGSNNKLAAEV 254 F+G+ N V Sbjct: 233 VYGFLGNVNLFHGRV 247 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 158 bits (400), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 145/246 (58%), Gaps = 8/246 (3%) Query: 1 MTELSVNDLHLDYGTGASANPILKGVSMQLQRGEVVALLGPSGSGKTTLLRAVAGLESPK 60 M ++++++ YG+ N +LKG+ M ++ GEV+A++G SGSGK+TLLR + GLES Sbjct: 1 MPLIAIDNVKKSYGS----NQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESID 56 Query: 61 AGTIDIGSRRVFDGARQFEMPAEERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSAEI 120 G+I + + G + E+ +G++FQ + L+PH +V N+ + K S + Sbjct: 57 EGSISVAGSHL--GKSELELRNLRLKVGMIFQQFNLFPHLSVGRNIMISPMIVKGVSEKD 114 Query: 121 AKRVK-EVLSQLGLGHLGERYPHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLR 179 A+ + + L ++GL + +P QLSGGQQQRVAIARAL PQ +L DE S LD +L Sbjct: 115 ARALAMKNLEKVGLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELV 174 Query: 180 EEARAFLRELIVRLGLSALMVTHDQGEAMAISDRILLLNNGRIEQQGTPQSMYQTPNTLF 239 E +R L G++ +MVTH+ A + DR++ ++ G++ + G P+ ++ P T Sbjct: 175 NEVLNVVRGL-AHEGMTLIMVTHEMRFAREVCDRVVFMHQGKVHEIGAPEDIFANPATPE 233 Query: 240 TAEFMG 245 +F+G Sbjct: 234 LKQFLG 239 >gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 246 Score = 150 bits (380), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 87/202 (43%), Positives = 125/202 (61%), Gaps = 11/202 (5%) Query: 16 GASANPILKGVSMQLQRGEVVALLGPSGSGKTTLLRAVAGLESPKAGTIDIGSRRVFDGA 75 GASA P+++ +S+ ++ GE VA++G SG GK+TLLRA AGL +P +G + + Sbjct: 16 GASA-PVIQDLSLTIEAGEFVAIVGGSGVGKSTLLRAAAGLIAPSSGDVQL--------- 65 Query: 76 RQFEMPAEERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSAEIAKRVKEVLSQLGLGH 135 + ++P R +VFQ L P +TVADNVAYGL+ + E R+K+ L GL Sbjct: 66 KLPQLPGRRRR-AVVFQDGRLLPWRTVADNVAYGLETLGISADEQQSRIKQALQLTGLAE 124 Query: 136 LGERYPHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLREEARAFLRELIVRLGL 195 GER+PHQLSGGQ QRV IARAL P ++L+DEP S +DA R +A L + Sbjct: 125 FGERWPHQLSGGQVQRVGIARALAVQPDLLLMDEPFSAVDALTRRNLQAELIRIWQATQS 184 Query: 196 SALMVTHDQGEAMAISDRILLL 217 + + VTHD EA+ ++DR+++L Sbjct: 185 AVMFVTHDIDEAVFLADRVIVL 206 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 880,150 Number of extensions: 37833 Number of successful extensions: 350 Number of sequences better than 1.0e-08: 63 Number of HSP's gapped: 248 Number of HSP's successfully gapped: 68 Length of query: 362 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 278 Effective length of database: 910,473 Effective search space: 253111494 Effective search space used: 253111494 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)